PDB entry 5ot8

View 5ot8 on RCSB PDB site
Description: Structure of the periplasmic binding protein (PBP) NocT-G97S mutant from A. tumefaciens C58 in complex with octopine.
Class: protein binding
Keywords: Agrobacterium tumefaciens, Arginine, Bacterial Proteins, DNA, Bacterial, Gene Expression Regulation, Genes, Ligands, Plant Tumors, Plasmids, PROTEIN BINDING
Deposited on 2017-08-21, released 2017-12-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-12-20, with a file datestamp of 2017-12-15.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nopaline-binding periplasmic protein
    Species: Agrobacterium fabrum str. C58 [TaxId:176299]
    Gene: nocT, Atu6027, AGR_pTi_67
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35120
      • engineered mutation (72)
    Domains in SCOPe 2.06: d5ot8a_
  • Chain 'B':
    Compound: Nopaline-binding periplasmic protein
    Species: Agrobacterium fabrum str. C58 [TaxId:176299]
    Gene: nocT, Atu6027, AGR_pTi_67
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35120
      • engineered mutation (72)
    Domains in SCOPe 2.06: d5ot8b_
  • Heterogens: 6DB, EDO, SO4, CL, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ot8A (A:)
mkdyksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipsl
tagrydaimaamsiqparekviafsrpylltpmtflttadspllktqvaienlpldnitp
eqkaeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridas
lasvsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiad
gtvqklsqqwfgydaspkqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5ot8A (A:)
dyksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipslta
grydaimaamsiqparekviafsrpylltpmtflttadspllktqvaienlpldnitpeq
kaeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridasla
svsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiadgt
vqklsqqwfgydaspk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ot8B (B:)
mkdyksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipsl
tagrydaimaamsiqparekviafsrpylltpmtflttadspllktqvaienlpldnitp
eqkaeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridas
lasvsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiad
gtvqklsqqwfgydaspkqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5ot8B (B:)
yksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipsltag
rydaimaamsiqparekviafsrpylltpmtflttadspllktqvaienlpldnitpeqk
aeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridaslas
vsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiadgtv
qklsqqwfgydaspk