PDB entry 5on9

View 5on9 on RCSB PDB site
Description: Crystal structure of NikA in complex with reduced Fe-L1 (N-(2-hydroxybenzyl)-N'-(2-thiomethylbenzyl)-N,N'-ethylenediamine diacetic acid)
Class: metal binding protein
Keywords: Artificial oxygenase, CLEC, dioxygen activation, oxidation of carbon-carbon double bonds, METAL BINDING PROTEIN
Deposited on 2017-08-03, released 2017-12-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-08-19, with a file datestamp of 2020-08-14.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nickel-binding periplasmic protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: nikA, b3476, JW3441
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5on9a_
  • Chain 'B':
    Compound: Nickel-binding periplasmic protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: nikA, b3476, JW3441
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5on9b_
  • Heterogens: FE, 9YH, DTT, GOL, CL, ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5on9A (A:)
aapdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedg
ktwtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqi
tlksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvr
nenywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayht
qlsqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpy
anlglkpsqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeii
qadmrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpshadfq
aqqgladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpel
gnipyapiateipfeqikpvkp

    Sequence, based on observed residues (ATOM records): (download) 
    >5on9A (A:)
apdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedgk
twtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqit
lksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvrn
enywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayhtq
lsqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpya
nlglkpsqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeiiq
admrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpshadfqa
qqgladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpelg
nipyapiateipfeqikp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5on9B (B:)
aapdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedg
ktwtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqi
tlksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvr
nenywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayht
qlsqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpy
anlglkpsqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeii
qadmrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpshadfq
aqqgladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpel
gnipyapiateipfeqikpvkp

    Sequence, based on observed residues (ATOM records): (download) 
    >5on9B (B:)
apdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedgk
twtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqit
lksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvrn
enywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayhtq
lsqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpya
nlglkpsqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeiiq
admrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpshadfqa
qqgladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpelg
nipyapiateipfeqikp