PDB entry 5odb

View 5odb on RCSB PDB site
Description: Crystal structure of the RA-associated mAb D10 (chimeric Fab fragment)
Class: immune system
Keywords: antibody Fab fragment, IMMUNE SYSTEM rheumatoid arthritis associated, IMMUNE SYSTEM
Deposited on 2017-07-05, released 2018-07-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-08-07, with a file datestamp of 2019-08-02.
Experiment type: XRAY
Resolution: 1.53 Å
R-factor: N/A
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D10 Fab fragment - heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5ODB (0-222)
    Domains in SCOPe 2.08: d5odba_
  • Chain 'B':
    Compound: D10 Fab fragment - light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5ODB
    Domains in SCOPe 2.08: d5odbb1, d5odbb2
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5odbA (A:)
    evqlvesgggvvqpgrslrlscaasgftfssydmhwvrqapgkglewvavisydgsnkyy
    adsvkgrftisrdnskntlylhmnslraedtavyycskvrgaaatgyyygmdvwgqgttv
    tvssakttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpav
    lqsdlytlsssvtvtsstwpsqsitcnvahpasstkvdkkiep
    

    Sequence, based on observed residues (ATOM records): (download)
    >5odbA (A:)
    evqlvesgggvvqpgrslrlscaasgftfssydmhwvrqapgkglewvavisydgsnkyy
    adsvkgrftisrdnskntlylhmnslraedtavyycskvrgaaatgyyygmdvwgqgttv
    tvssakttapsvyplapvssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdly
    tlsssvtvtsstwpsqsitcnvahpasstkvdkkiep
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5odbB (B:)
    tsyeltqppsvsvspgqtasitcsgdklgdkyacwyqqkpgqspvlviyqhskrpsgipe
    rfsgsnsgntatltisgtqamdeadyycqawdsstvvfgggtkltvlgqpksspsvtlfp
    psseeletnkatlvctitdfypgvvtvdwkvdgtpvtqgmettqpskqsnnkymassylt
    ltarawerhssyscqvtheghtvekslsradcs
    

    Sequence, based on observed residues (ATOM records): (download)
    >5odbB (B:)
    yeltqppsvsvspgqtasitcsgdklgdkyacwyqqkpgqspvlviyqhskrpsgiperf
    sgsnsgntatltisgtqamdeadyycqawdsstvvfgggtkltvlgqpksspsvtlfpps
    seeletnkatlvctitdfypgvvtvdwkvdgtpvtqgmettqpskqsnnkymassyltlt
    arawerhssyscqvtheghtvekslsr