PDB entry 5od2

View 5od2 on RCSB PDB site
Description: Crystal structure of ADP-dependent glucokinase from Methanocaldococcus jannaschii
Class: transferase
Keywords: sugar metabolism, protein-inhibitor complex, TRANSFERASE
Deposited on 2017-07-04, released 2018-01-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Bifunctional ADP-specific glucokinase/phosphofructokinase
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfkC, glkA, MJ1604
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5od2a_
  • Chain 'B':
    Compound: Bifunctional ADP-specific glucokinase/phosphofructokinase
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfkC, glkA, MJ1604
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5od2b_
  • Chain 'C':
    Compound: Bifunctional ADP-specific glucokinase/phosphofructokinase
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfkC, glkA, MJ1604
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5od2c_
  • Heterogens: GLC, 5ID, MG, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5od2A (A:)
imeikkfietikgtklftayntnvdaikylkdedvqklvdefnhkdiiermeeypriiee
pldfvarlvhsiktgkpaevpikddkklhewfdrikydeermggqagivsnlmatlqidk
iivytpflskkqaemfvdydnllyplvengnlvlkkvreayrddpikinrifefkkglkf
klngeeitakqstrfivasrpealrieikddvrkflpkigeavdcaflsgyqaikeeyrd
gktakyyferaeedikllkknknikthlefasisnieirkmvvdyilsnvesvgmdetei
anvlhilgydelsnnilkdsfiedviegakilldkfknlevvqvhtiyyilfvcradnpl
skeeleeclefstilastkaklgniraiddlheglkiphnkygdllkeiaekfndnnyki
alspsryvekpkstvglgdtissgafvyyvsllnkkrm

    Sequence, based on observed residues (ATOM records): (download) 
    >5od2A (A:)
eikkfietikgtklftayntnvdaikylkdedvqklvdefnhkdiiermeeypriieepl
dfvarlvhsiktgkpaevpikddkklhewfdrikydeermggqagivsnlmatlqidkii
vytpflskkqaemfvdydnllyplvengnlvlkkvreayrddpikinrifefkkglkfkl
ngeeitakqstrfivasrpealrieikddvrkflpkigeavdcaflsgyqaikeeyrdgk
takyyferaeedikllkknknikthlefasisnieirkmvvdyilsnvesvgmdeteian
vlhilgydelsnnilkdsfiedviegakilldkfknlevvqvhtiyyilfvcradnplsk
eeleeclefstilastkaklgniraiddlheglkiphnkygdllkeiaekfndnnykial
spsryvekpkstvglgdtissgafvyyvsllnkkrm

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5od2B (B:)
imeikkfietikgtklftayntnvdaikylkdedvqklvdefnhkdiiermeeypriiee
pldfvarlvhsiktgkpaevpikddkklhewfdrikydeermggqagivsnlmatlqidk
iivytpflskkqaemfvdydnllyplvengnlvlkkvreayrddpikinrifefkkglkf
klngeeitakqstrfivasrpealrieikddvrkflpkigeavdcaflsgyqaikeeyrd
gktakyyferaeedikllkknknikthlefasisnieirkmvvdyilsnvesvgmdetei
anvlhilgydelsnnilkdsfiedviegakilldkfknlevvqvhtiyyilfvcradnpl
skeeleeclefstilastkaklgniraiddlheglkiphnkygdllkeiaekfndnnyki
alspsryvekpkstvglgdtissgafvyyvsllnkkrm

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5od2C (C:)
imeikkfietikgtklftayntnvdaikylkdedvqklvdefnhkdiiermeeypriiee
pldfvarlvhsiktgkpaevpikddkklhewfdrikydeermggqagivsnlmatlqidk
iivytpflskkqaemfvdydnllyplvengnlvlkkvreayrddpikinrifefkkglkf
klngeeitakqstrfivasrpealrieikddvrkflpkigeavdcaflsgyqaikeeyrd
gktakyyferaeedikllkknknikthlefasisnieirkmvvdyilsnvesvgmdetei
anvlhilgydelsnnilkdsfiedviegakilldkfknlevvqvhtiyyilfvcradnpl
skeeleeclefstilastkaklgniraiddlheglkiphnkygdllkeiaekfndnnyki
alspsryvekpkstvglgdtissgafvyyvsllnkkrm

    Sequence, based on observed residues (ATOM records): (download) 
    >5od2C (C:)
eikkfietikgtklftayntnvdaikylkdedvqklvdefnhkdiiermeeypriieepl
dfvarlvhsiktgkpaevpikddkklhewfdrikydeermggqagivsnlmatlqidkii
vytpflskkqaemfvdydnllyplvengnlvlkkvreayrddpikinrifefkkglkfkl
ngeeitakqstrfivasrpealrieikddvrkflpkigeavdcaflsgyqaikeeyrdgk
takyyferaeedikllkknknikthlefasisnieirkmvvdyilsnvesvgmdeteian
vlhilgydelsnnilkdsfiedviegakilldkfknlevvqvhtiyyilfvcradnplsk
eeleeclefstilastkaklgniraiddlheglkiphnkygdllkeiaekfndnnykial
spsryvekpkstvglgdtissgafvyyvsllnkkrm