PDB entry 5ocq

View 5ocq on RCSB PDB site
Description: Crystal structure of the complex of the kappa-carrageenase from Pseudoalteromonas carrageenovora with an oligotetrasaccharide of kappa-carrageenan
Class: hydrolase
Keywords: Glycoside hydrolase, kappa-carrageenase, beta jellyroll, marine carbohydrase, HYDROLASE
Deposited on 2017-07-03, released 2017-10-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: kappa-carrageenase
    Species: PSEUDOALTEROMONAS CARRAGEENOVORA [TaxId:227]
    Gene: CGKA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P43478
      • engineered mutation (143)
    Domains in SCOPe 2.08: d5ocqa_
  • Chain 'B':
    Compound: kappa-carrageenase
    Species: PSEUDOALTEROMONAS CARRAGEENOVORA [TaxId:227]
    Gene: CGKA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P43478 (Start-276)
      • engineered mutation (143)
      • expression tag (277-281)
    Domains in SCOPe 2.08: d5ocqb1, d5ocqb2
  • Heterogens: 9RN, G4S, CIT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ocqA (A:)
masmqppiakpgetwilqakrsdefnvkdatkwnfqtenygvwswknenatvsngklklt
tkreshqrtfwdgcnqqqvanyplyytsgvaksratgnygyyearikgastfpgvspafw
mystidrsltkegdvqyseidvvdltqksavresdhdlhnivvkngkptwmrpgsfpqtn
hngyhlpfdprndfhtygvnvtkdkitwyvdgeivgekdnlywhrqmnltlsqglrapht
qwkcnqfypsanksaegfptsmevdyvrtwvkvgnnnlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5ocqA (A:)
smqppiakpgetwilqakrsdefnvkdatkwnfqtenygvwswknenatvsngklklttk
reshqrtfwdgcnqqqvanyplyytsgvaksratgnygyyearikgastfpgvspafwmy
stidrsltkegdvqyseidvvdltqksavresdhdlhnivvkngkptwmrpgsfpqtnhn
gyhlpfdprndfhtygvnvtkdkitwyvdgeivgekdnlywhrqmnltlsqglraphtqw
kcnqfypsanksaegfptsmevdyvrtwvkv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ocqB (B:)
masmqppiakpgetwilqakrsdefnvkdatkwnfqtenygvwswknenatvsngklklt
tkreshqrtfwdgcnqqqvanyplyytsgvaksratgnygyyearikgastfpgvspafw
mystidrsltkegdvqyseidvvdltqksavresdhdlhnivvkngkptwmrpgsfpqtn
hngyhlpfdprndfhtygvnvtkdkitwyvdgeivgekdnlywhrqmnltlsqglrapht
qwkcnqfypsanksaegfptsmevdyvrtwvkvgnnnlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5ocqB (B:)
mqppiakpgetwilqakrsdefnvkdatkwnfqtenygvwswknenatvsngklklttkr
eshqrtfwdgcnqqqvanyplyytsgvaksratgnygyyearikgastfpgvspafwmys
tidrsltkegdvqyseidvvdltqksavresdhdlhnivvkngkptwmrpgsfpqtnhng
yhlpfdprndfhtygvnvtkdkitwyvdgeivgekdnlywhrqmnltlsqglraphtqwk
cnqfypsanksaegfptsmevdyvrtwvkvgnnnlehhh