PDB entry 5o6y

View 5o6y on RCSB PDB site
Description: Crystal structure of the Bc1960 peptidoglycan N-acetylglucosamine deacetylase in complex with 4-naphthalen-1-yl-~{N}-oxidanyl-benzamide
Class: hydrolase
Keywords: inhibitor, complex, deacetylase, peptidoglycan, HYDROLASE
Deposited on 2017-06-07, released 2018-06-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-06-20, with a file datestamp of 2018-06-15.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Peptidoglycan N-acetylglucosamine deacetylase
  Species: Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) [TaxId:226900]
  Gene: BC_1960
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q81EK9 (0-213)
  Domains in SCOPe 2.08: d5o6ya_
• Chain 'B':
  Compound: Peptidoglycan N-acetylglucosamine deacetylase
  Species: Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) [TaxId:226900]
  Gene: BC_1960
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q81EK9 (0-213)
  Domains in SCOPe 2.08: d5o6yb_
• Chain 'C':
  Compound: Peptidoglycan N-acetylglucosamine deacetylase
  Species: Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) [TaxId:226900]
  Gene: BC_1960
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q81EK9 (0-213)
  Domains in SCOPe 2.08: d5o6yc_
• Chain 'D':
  Compound: Peptidoglycan N-acetylglucosamine deacetylase
  Species: Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) [TaxId:226900]
  Gene: BC_1960
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q81EK9 (0-213)
  Domains in SCOPe 2.08: d5o6yd_
• Heterogens: SO4, 5YA, PE3, PEG, PG0, NA, CL, ZN, DMS, HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5o6yA (A:)
  wtpfswvekyayafsgpynkaevaltfddgpdleftpkildklkqhnvkatffllgenae
  kfpnivkrianeghvignhtyshpnlakvnedeyrnqiikteeilnrlagyapkfirppy
  geilenqlkwateqnfmivqwsvdtvdwkgvsadtitnnvlgnsfpgsvilqhstpgghl
  qgsvdaldkiipqlktkgarfvtlpsmfqtsker
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5o6yB (B:)
  wtpfswvekyayafsgpynkaevaltfddgpdleftpkildklkqhnvkatffllgenae
  kfpnivkrianeghvignhtyshpnlakvnedeyrnqiikteeilnrlagyapkfirpxy
  geilenqlkwateqnfmivqwsvdtvdwkgvsadtitnnvlgnsfpgsvilqhstpgghl
  qgsvdaldkiipqlktkgarfvtlpsmfqtsker
  

  
  
• Chain 'C':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5o6yC (C:)
  wtpfswvekyayafsgpynkaevaltfddgpdleftpkildklkqhnvkatffllgenae
  kfpnivkrianeghvignhtyshpnlakvnedeyrnqiikteeilnrlagyapkfirpxy
  geilenqlkwateqnfmivqwsvdtvdwkgvsadtitnnvlgnsfpgsvilqhstpgghl
  qgsvdaldkiipqlktkgarfvtlpsmfqtsker
  

  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >5o6yD (D:)
  wtpfswvekyayafsgpynkaevaltfddgpdleftpkildklkqhnvkatffllgenae
  kfpnivkrianeghvignhtyshpnlakvnedeyrnqiikteeilnrlagyapkfirpxy
  geilenqlkwateqnfmivqwsvdtvdwkgvsadtitnnvlgnsfpgsvilqhstpgghl
  qgsvdaldkiipqlktkgarfvtlpsmfqtsker