PDB entry 5o4f

View 5o4f on RCSB PDB site
Description: Structure of GluK3 ligand-binding domain (S1S2) in complex with the agonist LM-12b at 2.10 A resolution
Class: membrane protein
Keywords: ionotropic glutamate receptor, kainate receptor, ligand-binding domain, gluk3, glur7, agonist, membrane protein
Deposited on 2017-05-29, released 2017-07-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-09-27, with a file datestamp of 2017-09-22.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor ionotropic, kainate 3
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grik3, Glur7
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5o4fa_
  • Chain 'B':
    Compound: Glutamate receptor ionotropic, kainate 3
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grik3, Glur7
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42264 (Start-117)
      • linker (118-119)
    • Uniprot P42264 (120-End)
    Domains in SCOPe 2.08: d5o4fb_
  • Heterogens: GOL, 8VE, ZN, CL, ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5o4fA (A:)
    gpgtnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlved
    gkygaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgt
    pidsaddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqr
    tltadyallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqe
    edklhimkekwwrgsgcp
    

    Sequence, based on observed residues (ATOM records): (download)
    >5o4fA (A:)
    rslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlvedgkyga
    qddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkpidsadd
    lakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqrtltadya
    llmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqeedklhim
    kekwwrgsgcp
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5o4fB (B:)
    gpgtnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlved
    gkygaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgt
    pidsaddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqr
    tltadyallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqe
    edklhimkekwwrgsgcp
    

    Sequence, based on observed residues (ATOM records): (download)
    >5o4fB (B:)
    rslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlvedgkyga
    qddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgtpidsa
    ddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqrtltad
    yallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqeedklh
    imkekwwrgc