PDB entry 5nuz

View 5nuz on RCSB PDB site
Description: Junin virus GP1 glycoprotein in complex with an antibody Fab fragment
Class: immune system
Keywords: viral antigen-antibody complex, immune system
Deposited on 2017-05-03, released 2017-06-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: eOD01 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5NUZ
    Domains in SCOPe 2.08: d5nuza_
  • Chain 'B':
    Compound: eOD01 light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5NUZ
    Domains in SCOPe 2.08: d5nuzb1, d5nuzb2
  • Chain 'C':
    Compound: Pre-glycoprotein polyprotein GP complex
    Species: Junin mammarenavirus [TaxId:11619]
    Gene: GPC
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Pre-glycoprotein polyprotein GP complex
    Species: Junin mammarenavirus [TaxId:11619]
    Gene: GPC
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: eOD01 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5NUZ
    Domains in SCOPe 2.08: d5nuzh_
  • Chain 'L':
    Compound: eOD01 light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5NUZ
    Domains in SCOPe 2.08: d5nuzl1, d5nuzl2
  • Heterogens: GOL, IPA, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5nuzA (A:)
etgevqlqqsgtvlarpgasvkmsckasgytftsywmhwikqrpgqglewigaiypgdsd
tkynqkfkgkakltavtststaymelssltnedsavyyctrrntltgdyfdywgqgttlt
vssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavl
qsdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdchhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5nuzA (A:)
evqlqqsgtvlarpgasvkmsckasgytftsywmhwikqrpgqglewigaiypgdsdtky
nqkfkgkakltavtststaymelssltnedsavyyctrrntltgdyfdywgqgttltvss
akttppsvyplapgsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlss
svtvpsstwpsetvtcnvahpasstkvdkkivprd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5nuzB (B:)
etgdivltqspaslavslgqratiscrasesvddygisfmnwfqqkpgqppklliytass
qgsgvparfsgsgsgtdfslnihpmeeddtamyfcqqskevpytfgggtkleikradaap
tvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdsty
smsstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >5nuzB (B:)
gdivltqspaslavslgqratiscrasesvddygisfmnwfqqkpgqppklliytassqg
sgvparfsgsgsgtdfslnihpmeeddtamyfcqqskevpytfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5nuzH (H:)
etgevqlqqsgtvlarpgasvkmsckasgytftsywmhwikqrpgqglewigaiypgdsd
tkynqkfkgkakltavtststaymelssltnedsavyyctrrntltgdyfdywgqgttlt
vssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavl
qsdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdchhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5nuzH (H:)
evqlqqsgtvlarpgasvkmsckasgytftsywmhwikqrpgqglewigaiypgdsdtky
nqkfkgkakltavtststaymelssltnedsavyyctrrntltgdyfdywgqgttltvss
akttppsvyplapgsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlss
svtvpsstwpsetvtcnvahpasstkvdkkivprd

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5nuzL (L:)
etgdivltqspaslavslgqratiscrasesvddygisfmnwfqqkpgqppklliytass
qgsgvparfsgsgsgtdfslnihpmeeddtamyfcqqskevpytfgggtkleikradaap
tvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdsty
smsstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >5nuzL (L:)
tgdivltqspaslavslgqratiscrasesvddygisfmnwfqqkpgqppklliytassq
gsgvparfsgsgsgtdfslnihpmeeddtamyfcqqskevpytfgggtkleikradaapt
vsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstys
msstltltkdeyerhnsytceathktstspivksfnrne