PDB entry 5nrk
View 5nrk on RCSB PDB site
Description: Crystal structure of the sixth cohesin from Acetivibrio cellulolyticus' scaffoldin B in complex with Cel5 dockerin S15I, I16N mutant
Class: protein binding
Keywords: cellulosome, cohesin, dockerin, type I cohesin-dockerin, Coh-Doc, protein-protein interaction, protein binding
Deposited on
2017-04-24, released
2018-01-31
The last revision prior to the SCOPe 2.07 freeze date was dated
2018-02-07, with a file datestamp of
2018-02-02.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: N/A
AEROSPACI score: 0.51
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: endoglucanase
Species: Acetivibrio cellulolyticus [TaxId:35830]
Gene: cipV
Database cross-references and differences (RAF-indexed):
- Uniprot Q9RPL0 (1-140)
- initiating methionine (0)
- expression tag (141-142)
Domains in SCOPe 2.07: d5nrka1, d5nrka2 - Chain 'B':
Compound: DocCel5: Type I dockerin repeat domain from A. cellulolyticus family 5 endoglucanase WP_010249057 S15I, I16N mutant
Species: Acetivibrio cellulolyticus [TaxId:35830]
Gene: BglC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5nrkb_ - Chain 'C':
Compound: endoglucanase
Species: Acetivibrio cellulolyticus [TaxId:35830]
Gene: cipV
Database cross-references and differences (RAF-indexed):
- Uniprot Q9RPL0 (1-140)
- initiating methionine (0)
- expression tag (141-142)
Domains in SCOPe 2.07: d5nrkc1, d5nrkc2 - Chain 'D':
Compound: DocCel5: Type I dockerin repeat domain from A. cellulolyticus family 5 endoglucanase WP_010249057 S15I, I16N mutant
Species: Acetivibrio cellulolyticus [TaxId:35830]
Gene: BglC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5nrkd_ - Heterogens: CA, SCN, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5nrkA (A:)
mqtgfnlsidtvegnpgssvvvpvklsgiskngistadftvtydatkleyisgdagsivt
npgvnfginkesdgklkvlfldytmstgyistdgvfanlnfnikssaaigskaevsisgt
ptfgdstltpvvakvtngavnle
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>5nrkB (B:)
kpgdvdgngsinindfalmrnyllgnlkdfpaeddikagdlngdksinsldfaimrmyll
gmitkfsv
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>5nrkC (C:)
mqtgfnlsidtvegnpgssvvvpvklsgiskngistadftvtydatkleyisgdagsivt
npgvnfginkesdgklkvlfldytmstgyistdgvfanlnfnikssaaigskaevsisgt
ptfgdstltpvvakvtngavnle
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5nrkD (D:)
kpgdvdgngsinindfalmrnyllgnlkdfpaeddikagdlngdksinsldfaimrmyll
gmitkfsv
Sequence, based on observed residues (ATOM records): (download)
>5nrkD (D:)
kpgdvdgngsinindfalmrnyllgnlkdfpaeddikagdlngdksinsldfaimrmyll
gmitkfs