PDB entry 5nrd

View 5nrd on RCSB PDB site
Description: A Native Ternary Complex of Alpha-1,3-Galactosyltransferase (a-3GalT) Supports a Conserved Reaction Mechanism for Retaining Glycosyltransferases - alpha-3GalT in complex with Co2+, UDP-Gal and lactose - a3GalT-Co2+-UDP-Gal-LAT-2
Class: transferase
Keywords: glycosyltransferase, GTA, transferase
Deposited on 2017-04-22, released 2017-10-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.12 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: n-acetyllactosaminide alpha-1,3-galactosyltransferase
    Species: Bos taurus [TaxId:9913]
    Gene: GGTA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nrda_
  • Chain 'B':
    Compound: n-acetyllactosaminide alpha-1,3-galactosyltransferase
    Species: Bos taurus [TaxId:9913]
    Gene: GGTA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nrdb_
  • Heterogens: CO, GDU, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5nrdA (A:)
gsmesklklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfav
gryiehyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwq
dismmrmktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpn
dftyerrkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhd
eshlnkyfllnkptkilspeycwdyhiglpadiklvkmswqtkeynvvrnnv

    Sequence, based on observed residues (ATOM records): (download) 
    >5nrdA (A:)
klklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgryie
hyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwqdismm
rmktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndftye
rrkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhdeshln
kyfllnkptkilspeycwdyhiglpadiklvkmswqtkeynvvr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5nrdB (B:)
gsmesklklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfav
gryiehyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwq
dismmrmktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpn
dftyerrkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhd
eshlnkyfllnkptkilspeycwdyhiglpadiklvkmswqtkeynvvrnnv

    Sequence, based on observed residues (ATOM records): (download) 
    >5nrdB (B:)
klklsdwfnpfkrpevvtmtkwkapvvwegtynravldnyyakqkitvgltvfavgryie
hyleefltsankhfmvghpvifyimvddvsrmplielgplrsfkvfkikpekrwqdismm
rmktigehivahiqhevdflfcmdvdqvfqdkfgvetlgesvaqlqawwykadpndftye
rrkesaayipfgegdfyyhaaifggtptqvlnitqecfkgilkdkkndieaqwhdeshln
kyfllnkptkilspeycwdyhiglpadiklvkmswqt