PDB entry 5njv

View 5njv on RCSB PDB site
Description: Flavivirus NS5 domain
Class: viral protein
Keywords: Zika, flavivirus, NS5, SAH, viral protein
Deposited on 2017-03-29, released 2018-01-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-18, with a file datestamp of 2018-04-13.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ns5
    Species: Zika virus (strain Mr 766) [TaxId:64320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5njva_
  • Chain 'B':
    Compound: ns5
    Species: Zika virus (strain Mr 766) [TaxId:64320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5njvb_
  • Chain 'C':
    Compound: ns5
    Species: Zika virus (strain Mr 766) [TaxId:64320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5njvc_
  • Chain 'D':
    Compound: ns5
    Species: Zika virus (strain Mr 766) [TaxId:64320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5njvd_
  • Heterogens: SAM, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5njvA (A:)
tgetlgekwkarlnqmsalefysykksgitevcreearralkdgvatgghavsrgsaklr
wlvdrgylqpygkvidlgcgrggwsyyaatirkvqevkgytkggpgheepvlvqsygwni
vrlksgvdvfhmaaepcdtllcdigesssspeveeartlrvlsmvgdwlekrpgafcikv
lcpytstmmetlerlqrryggglvrvplsrnsthemywvsgaksntiksvsttsqlllgr
mdgprrpvkyeedvnlgsgtra

    Sequence, based on observed residues (ATOM records): (download) 
    >5njvA (A:)
tgetlgekwkarlnqmsalefysykksgitevcreearralkdgvatgghavsrgsaklr
wlvdrgylqpygkvidlgcgrggwsyyaatirkvqevkgytkggpgheepvlvqsygwni
vrlksgvdvfhmaaepcdtllcdigesssspeveeartlrvlsmvgdwlekrpgafcikv
lcpytstmmetlerlqrryggglvrvplsrnsthemywvsgaksntiksvsttsqlllgr
mdgprrpvkyeedvnlgsgtr

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5njvB (B:)
tgetlgekwkarlnqmsalefysykksgitevcreearralkdgvatgghavsrgsaklr
wlvdrgylqpygkvidlgcgrggwsyyaatirkvqevkgytkggpgheepvlvqsygwni
vrlksgvdvfhmaaepcdtllcdigesssspeveeartlrvlsmvgdwlekrpgafcikv
lcpytstmmetlerlqrryggglvrvplsrnsthemywvsgaksntiksvsttsqlllgr
mdgprrpvkyeedvnlgsgtra

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5njvC (C:)
tgetlgekwkarlnqmsalefysykksgitevcreearralkdgvatgghavsrgsaklr
wlvdrgylqpygkvidlgcgrggwsyyaatirkvqevkgytkggpgheepvlvqsygwni
vrlksgvdvfhmaaepcdtllcdigesssspeveeartlrvlsmvgdwlekrpgafcikv
lcpytstmmetlerlqrryggglvrvplsrnsthemywvsgaksntiksvsttsqlllgr
mdgprrpvkyeedvnlgsgtra

    Sequence, based on observed residues (ATOM records): (download) 
    >5njvC (C:)
getlgekwkarlnqmsalefysykksgitevcreearrgvatgghavsrgsaklrwlvdr
gylqpygkvidlgcgrggwsyyaatirkvqevkgytkggpgheepvlvqsygwnivrlks
gvdvfhmaaepcdtllcdigesssspeveeartlrvlsmvgdwlekrpgafcikvlcpyt
stmmetlerlqrryggglvrvplsrnsthemywvsgaksntiksvsttsqlllgrmdgpr
rpvkyeedvnlgsgtr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5njvD (D:)
tgetlgekwkarlnqmsalefysykksgitevcreearralkdgvatgghavsrgsaklr
wlvdrgylqpygkvidlgcgrggwsyyaatirkvqevkgytkggpgheepvlvqsygwni
vrlksgvdvfhmaaepcdtllcdigesssspeveeartlrvlsmvgdwlekrpgafcikv
lcpytstmmetlerlqrryggglvrvplsrnsthemywvsgaksntiksvsttsqlllgr
mdgprrpvkyeedvnlgsgtra

    Sequence, based on observed residues (ATOM records): (download) 
    >5njvD (D:)
tgetlgekwkarlnqmsalefysykksgitevcreearraatgghavsrgsaklrwlvdr
gylqpygkvidlgcgrggwsyyaatirkvqevkgytkggpgheepvlvqsygwnivrlks
gvdvfhmaaepcdtllcdigesssspeveeartlrvlsmvgdwlekrpgafcikvlcpyt
stmmetlerlqrryggglvrvplsrnsthemywvsgaksntiksvsttsqlllgrmdgpr
rpvkyeedvnlgsgtr