PDB entry 5nhi

View 5nhi on RCSB PDB site
Description: Crystal structure of the Escherichia coli N-terminal domain of DsbD (nDsbD) without the cap-loop region
Class: oxidoreductase
Keywords: Immunoglobulin-like fold, Thiol disulfide oxidoreductase, electron transport, oxidoreductase
Deposited on 2017-03-21, released 2018-02-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-16, with a file datestamp of 2019-10-11.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Thiol:disulfide interchange protein dsbD
    Species: Escherichia coli [TaxId:562]
    Gene: dsbD, EL75_4028, EL79_4206, EL80_4122
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0A0GNS2
      • engineered mutation (67)
      • engineered mutation (69)
    Domains in SCOPe 2.08: d5nhia_
  • Chain 'B':
    Compound: Thiol:disulfide interchange protein dsbD
    Species: Escherichia coli [TaxId:562]
    Gene: dsbD, EL75_4028, EL79_4206, EL80_4122
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0A0GNS2
      • engineered mutation (67)
      • engineered mutation (69)
    Domains in SCOPe 2.08: d5nhib_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5nhiA (A:)
mdtlfdapgrsqfvpadqafafdfqqnqhdlnltwqikdgyylyrkqiritpehakiadv
qlpqgvwaggseiyrdrltlpvtinqasagatltvtyqgcadagfcyppetktvplsevv
annaapqpvglvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5nhiA (A:)
qfvpadqafafdfqqnqhdlnltwqikdgyylyrkqiritpehakiadvqlpqgvwaggs
eiyrdrltlpvtinqasagatltvtyqgcadagfcyppetktvplsevvan

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5nhiB (B:)
mdtlfdapgrsqfvpadqafafdfqqnqhdlnltwqikdgyylyrkqiritpehakiadv
qlpqgvwaggseiyrdrltlpvtinqasagatltvtyqgcadagfcyppetktvplsevv
annaapqpvglvpr

    Sequence, based on observed residues (ATOM records): (download) 
    >5nhiB (B:)
sqfvpadqafafdfqqnqhdlnltwqikdgyylyrkqiritpehakiadvqlpqgvwagg
seiyrdrltlpvtinqasagatltvtyqgcadagfcyppetktvplsevvann