PDB entry 5nhe

View 5nhe on RCSB PDB site
Description: Crystal structure of xylose isomerase from Piromyces E2 in complex with two Cd2+ ions and xylose
Class: isomerase
Keywords: isomerase, TIM-barrel
Deposited on 2017-03-21, released 2017-11-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.86 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: xylose isomerase
    Species: Piromyces sp. E2 [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nhea_
  • Chain 'B':
    Compound: xylose isomerase
    Species: Piromyces sp. E2 [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nheb_
  • Chain 'C':
    Compound: xylose isomerase
    Species: Piromyces sp. E2 [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nhec_
  • Chain 'D':
    Compound: xylose isomerase
    Species: Piromyces sp. E2 [TaxId:73868]
    Gene: XYLA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5nhed_
  • Heterogens: CD, XLS, XYP, XYS, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5nheA (A:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >5nheA (A:)
akeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqf
gggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlk
avvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagiel
gaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptk
hqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrg
dyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgm
damaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkq
tsgkqelyeaivamyq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5nheB (B:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >5nheB (B:)
akeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqf
gggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlk
avvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagiel
gaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptk
hqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrg
dyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgm
damaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkq
tsgkqelyeaivamyq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5nheC (C:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >5nheC (C:)
akeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqf
gggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlk
avvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagiel
gaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptk
hqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrg
dyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgm
damaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkq
tsgkqelyeaivamyq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5nheD (D:)
makeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadq
fgggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnl
kavvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagie
lgaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmept
khqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanr
gdyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsg
mdamaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepk
qtsgkqelyeaivamyq

    Sequence, based on observed residues (ATOM records): (download) 
    >5nheD (D:)
akeyfpqiqkikfegkdsknplafhyydaekevmgkkmkdwlrfamawwhtlcaegadqf
gggtksfpwnegtdaieiakqkvdagfeimqklgipyycfhdvdlvsegnsieeyesnlk
avvaylkekqketgikllwstanvfghkrymngastnpdfdvvaraivqiknaidagiel
gaenyvfwggregymsllntdqkrekehmatmltmardyarskgfkgtfliepkpmeptk
hqydvdtetaigflkahnldkdfkvnievnhatlaghtfehelacavdagmlgsidanrg
dyqngwdtdqfpidqyelvqawmeiirgggfvtggtnfdaktrrnstdlediiiahvsgm
damaralenaakllqespytkmkkeryasfdsgigkdfedgkltleqvyeygkkngepkq
tsgkqelyeaivamyq