PDB entry 5nf6

View 5nf6 on RCSB PDB site
Description: Structure of GluK3 ligand-binding domain (S1S2) in complex with CIP-AS at 2.55 A resolution
Class: membrane protein
Keywords: ionotropic glutamate receptor, kainate receptor, ligand-binding domain, gluk3, glur7, agonist, membrane protein
Deposited on 2017-03-13, released 2017-07-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-09-27, with a file datestamp of 2017-09-22.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor ionotropic, kainate 3,Glutamate receptor ionotropic, kainate 3
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grik3, Glur7
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42264 (Start-117)
      • linker (118-119)
    • Uniprot P42264 (120-257)
    Domains in SCOPe 2.08: d5nf6a_
  • Chain 'B':
    Compound: Glutamate receptor ionotropic, kainate 3,Glutamate receptor ionotropic, kainate 3
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grik3, Glur7
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42264 (Start-117)
      • linker (118-119)
    • Uniprot P42264 (120-End)
    Domains in SCOPe 2.08: d5nf6b_
  • Heterogens: ZN, 8VN, ACT, GOL, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5nf6A (A:)
    gpgtnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlved
    gkygaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgt
    pidsaddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqr
    tltadyallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqe
    edklhimkekwwrgsgcp
    

    Sequence, based on observed residues (ATOM records): (download)
    >5nf6A (A:)
    nrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlvedgkyg
    aqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgtpids
    addlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqrtlta
    dyallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqeedkl
    himkekwwrgsgcp
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5nf6B (B:)
    gpgtnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlved
    gkygaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgt
    pidsaddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqr
    tltadyallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqe
    edklhimkekwwrgsgcp
    

    Sequence, based on observed residues (ATOM records): (download)
    >5nf6B (B:)
    rslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlvedgkyga
    qddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgtpidsa
    ddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqrtltad
    yallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqeedklh
    imkekwwrgsgc