PDB entry 5nf5
View 5nf5 on RCSB PDB site
Description: Structure of GluK1 ligand-binding domain (S1S2) in complex with CIP-AS at 2.85 A resolution
Class: membrane protein
Keywords: ionotropic glutamate receptor, kainate receptor, ligand-binding domain, gluk1, glur5, agonist, membrane protein
Deposited on
2017-03-13, released
2017-07-26
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-09-27, with a file datestamp of
2017-09-22.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: N/A
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Glutamate receptor ionotropic, kainate 1,Glutamate receptor ionotropic, kainate 1
Species: Rattus norvegicus [TaxId:10116]
Gene: Grik1, Glur5
Database cross-references and differences (RAF-indexed):
- Uniprot P22756 (Start-115)
- variant (33)
- linker (116-117)
- Uniprot P22756 (118-256)
Domains in SCOPe 2.08: d5nf5a_ - Chain 'B':
Compound: Glutamate receptor ionotropic, kainate 1,Glutamate receptor ionotropic, kainate 1
Species: Rattus norvegicus [TaxId:10116]
Gene: Grik1, Glur5
Database cross-references and differences (RAF-indexed):
- Uniprot P22756 (Start-115)
- variant (33)
- linker (116-117)
- Uniprot P22756 (118-256)
Domains in SCOPe 2.08: d5nf5b_ - Heterogens: CL, 8VN, GOL, SO4
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5nf5A (A:)
ganrtlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgk
ygaqndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpi
dsaddlakqtkieygavrdgstmtffkkskistyekmwafmssrqqsalvknsdegiqrv
lttdyallmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqee
gklhmmkekwwrgngcp
Sequence, based on observed residues (ATOM records): (download)
>5nf5A (A:)
rtlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgkyga
qndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpidsa
ddlakqtkieygavrdgstmtffkkskistyekmwafmssrqqsalvknsdegiqrvltt
dyallmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqeegkl
hmmkekwwrgngcp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5nf5B (B:)
ganrtlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgk
ygaqndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpi
dsaddlakqtkieygavrdgstmtffkkskistyekmwafmssrqqsalvknsdegiqrv
lttdyallmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqee
gklhmmkekwwrgngcp
Sequence, based on observed residues (ATOM records): (download)
>5nf5B (B:)
nrtlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgkyg
aqndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpids
addlakqtkieygavrdgstmtffkkskistyekmwafmssrqqsalvknsdegiqrvlt
tdyallmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqeegk
lhmmkekwwrgngcp