PDB entry 5ndc

View 5ndc on RCSB PDB site
Description: Structure of ba3-type cytochrome c oxidase from Thermus thermophilus by serial femtosecond crystallography
Class: oxidoreductase
Keywords: Cytochrome c oxidase, Oxidoreductase, SFX, Respiratory chain enzyme
Deposited on 2017-03-08, released 2017-08-23
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-08-23, with a file datestamp of 2017-08-18.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytochrome c oxidase subunit 1
    Species: Thermus thermophilus [TaxId:274]
    Gene: cbaA, TTHA1135
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5ndca_
  • Chain 'B':
    Compound: Cytochrome c oxidase subunit 2
    Species: Thermus thermophilus [TaxId:274]
    Gene: cbaB, ctaC, TTHA1134
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5ndcb1, d5ndcb2
  • Chain 'C':
    Compound: Cytochrome c oxidase polypeptide IIA
    Species: Thermus thermophilus [TaxId:274]
    Gene: HGMM_F04D06C07, TTMY_0198
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5ndcc_
  • Heterogens: CU, HEM, HAS, OLC, CUA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ndcA (A:)
mhhhhhhhavraseisrvyeaypekkatlyflvlgflalivgslfgpfqalnygnvdayp
llkrllpfvqsyyqgltlhgvlnaivftqlfaqaimvylparelnmrpnmglmwlswwma
figlvvaalpllaneatvlytfypplkghwafylgasvfvlstwvsiyivldlwrrwkaa
npgkvtplvtymavvfwlmwflaslglvleavlfllpwsfglvegvdplvartlfwwtgh
pivyfwllpayaiiytilpkqaggklvsdpmarlafllflllstpvgfhhqfadpgidpt
wkmihsvltlfvavpslmtaftvaaslefagrlrggrglfgwiralpwdnpafvapvlgl
lgfipggaggivnasftldyvvhntawvpghfhlqvaslvtltamgslywllpnltgkpi
sdaqrrlglavvwlwflgmmimavglhwagllnvprrayiaqvpdayphaavpmvfnvla
givllvalllfiyglfsvllsrerkpelaeaplpfaevisgpedrrlvlamdrigfwfav
aailvvlaygptlvqlfghlnpvpgwrlw

    Sequence, based on observed residues (ATOM records): (download) 
    >5ndcA (A:)
srvyeaypekkatlyflvlgflalivgslfgpfqalnygnvdaypllkrllpfvqsyyqg
ltlhgvlnaivftqlfaqaimvylparelnmrpnmglmwlswwmafiglvvaalpllane
atvlytfypplkghwafylgasvfvlstwvsiyivldlwrrwkaanpgkvtplvtymavv
fwlmwflaslglvleavlfllpwsfglvegvdplvartlfwwtghpivyfwllpayaiiy
tilpkqaggklvsdpmarlafllflllstpvgfhhqfadpgidptwkmihsvltlfvavp
slmtaftvaaslefagrlrggrglfgwiralpwdnpafvapvlgllgfipggaggivnas
ftldyvvhntawvpghfhlqvaslvtltamgslywllpnltgkpisdaqrrlglavvwlw
flgmmimavglhwagllnvprrayiaqvpdayphaavpmvfnvlagivllvalllfiygl
fsvllsrerkpelaeaplpfaevisgpedrrlvlamdrigfwfavaailvvlaygptlvq
lfghlnpvpgwrlw

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ndcB (B:)
mvdehkahkailayekgwlafslamlfvfialiaytlathtagvipagklervdpttvrq
egpwadpaqavvqtgpnqytvyvlafafgyqpnpievpqgaeivfkitspdvihgfhveg
tninvevlpgevstvrytfkrpgeyriicnqycglghqnmfgtivvke

    Sequence, based on observed residues (ATOM records): (download) 
    >5ndcB (B:)
vdehkahkailayekgwlafslamlfvfialiaytlathtagvipagklervdpttvrqe
gpwadpaqavvqtgpnqytvyvlafafgyqpnpievpqgaeivfkitspdvihgfhvegt
ninvevlpgevstvrytfkrpgeyriicnqycglghqnmfgtivvke

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ndcC (C:)
meekpkgalavilvltltilvfwlgvyavffarg

    Sequence, based on observed residues (ATOM records): (download) 
    >5ndcC (C:)
kpkgalavilvltltilvfwlgvyavffarg