PDB entry 5ndb

View 5ndb on RCSB PDB site
Description: Crystal structure of metallo-beta-lactamase SPM-1 complexed with cyclobutanone inhibitor
Class: hydrolase
Keywords: lactamase, inhibitor, cyclobutanone, Hydrolase
Deposited on 2017-03-08, released 2018-01-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-25, with a file datestamp of 2018-04-20.
Experiment type: XRAY
Resolution: 2.38 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: beta-lactamase imp-1
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: spm-1, bla SPM-1, blaSPM-1, CCBH4851_00081, ICEPaeSP_00028
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ndba_
  • Chain 'B':
    Compound: beta-lactamase imp-1
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: spm-1, bla SPM-1, blaSPM-1, CCBH4851_00081, ICEPaeSP_00028
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ndbb_
  • Heterogens: ZN, GOL, DMS, CL, 8TW, SO4, TRS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ndbA (A:)
gpkssdhvdlpynltatkidsdvfvvtdrdfyssnvlvakmldgtvvivsspfenlgtqt
lmdwvaktmkpkkvvainthfhldgtggneiykkmgaetwssdltkqlrleenkkdrika
aefyknedlkrrilsshpvpadnvfdlkqgkvfsfsnelvevsfpgpahspdnvvvyfpk
kkllfggcmikpkelgylgdanvkawpdsarrlkkfdakivipghgewggpemvnktikv
aekavgemrl

    Sequence, based on observed residues (ATOM records): (download) 
    >5ndbA (A:)
dhvdlpynltatkidsdvfvvtdrdfyssnvlvakmldgtvvivsspfenlgtqtlmdwv
aktmkpkkvvainthfhldgtggneiykkmgaetwssdltkqlrleenkkdrikaaefyk
nedlkrrilsshpvpadnvfdlkqgkvfsfsnelvevsfpgpahspdnvvvyfpkkkllf
ggcmikpkelgylgdanvkawpdsarrlkkfdakivipghgewggpemvnktikvaekav
gemr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ndbB (B:)
gpkssdhvdlpynltatkidsdvfvvtdrdfyssnvlvakmldgtvvivsspfenlgtqt
lmdwvaktmkpkkvvainthfhldgtggneiykkmgaetwssdltkqlrleenkkdrika
aefyknedlkrrilsshpvpadnvfdlkqgkvfsfsnelvevsfpgpahspdnvvvyfpk
kkllfggcmikpkelgylgdanvkawpdsarrlkkfdakivipghgewggpemvnktikv
aekavgemrl

    Sequence, based on observed residues (ATOM records): (download) 
    >5ndbB (B:)
dhvdlpynltatkidsdvfvvtdrdfyssnvlvakmldgtvvivsspfenlgtqtlmdwv
aktmkpkkvvainthfhldgtggneiykkmgaetwssdltkqlrleenkkdrikaaefyk
nedlkrrilsshpvpadnvfdlkqgkvfsfsnelvevsfpgpahspdnvvvyfpkkkllf
ggcmikpkelgylgdanvkawpdsarrlkkfdakivipghgewggpemvnktikvaekav
gemrl