PDB entry 5nbl
View 5nbl on RCSB PDB site
Description: Crystal structure of the Arp4-N-actin(APO-state) heterodimer bound by a nanobody
Class: hydrolase
Keywords: Nuclear actin, Actin-related-proteins, Chromatin remodeling, Nanobody, INO80, SWR1, NuA4, hydrolase
Deposited on
2017-03-02, released
2018-08-22
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-09-19, with a file datestamp of
2018-09-14.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Actin-related protein 4
Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
Gene: ARP4, ACT3, YJL081C, J1012
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Actin-related protein 4
Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
Gene: ARP4, ACT3, YJL081C, J1012
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: actin
Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
Gene: ACT1, ABY1, END7, YFL039C
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5nblc1, d5nblc2 - Chain 'D':
Compound: actin
Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
Gene: ACT1, ABY1, END7, YFL039C
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5nbld1, d5nbld2 - Chain 'E':
Compound: nAct-Nanobody
Species: Vicugna pacos [TaxId:30538]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5nble_ - Chain 'F':
Compound: nAct-Nanobody
Species: Vicugna pacos [TaxId:30538]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5nblf_ - Chain 'G':
Compound: Unknown peptide
Species: Trichoplusia ni [TaxId:7111]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Unknown peptide
Species: Trichoplusia ni [TaxId:7111]
Database cross-references and differences (RAF-indexed):
- Heterogens: CA, ATP, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5nblC (C:)
mdsevaalvidngsgmckagfagddapravfpsivgrprhqgimvgmgqkdsyvgdeaqs
krgiltlrypiehgivtnwddmekiwhhtfynelrvapeehpvllteapmnpksnrekmt
qimfetfnvpafyvsiqavlslyssgrttgivldsgdgvthvvpiyagfslphailridl
agrdltdylmkilsergysfsttaereivrdikeklcyvaldfeqemqtaaqsssieksy
elpdgqvitignerfrapealfhpsvlglesagidqttynsimkcdvdvrkelygnivms
ggttmfpgiaermqkeitalapssmkvkiiapperkysvwiggsilaslttfqqmwiskq
eydesgpsivhhkcf
Sequence, based on observed residues (ATOM records): (download)
>5nblC (C:)
dsevaalvidngsgmckagfagddapravfpsivgrprhgqkdsyvgdeaqskrgiltlr
ypiehgivtnwddmekiwhhtfynelrvapeehpvllteapmnpksnrekmtqimfetfn
vpafyvsiqavlslyssgrttgivldsgdgvthvvpiyagfslphailridlagrdltdy
lmkilsergysfsttaereivrdikeklcyvaldfeqemqtaaqsssieksyelpdgqvi
tignerfrapealfhpsvlglesagidqttynsimkcdvdvrkelygnivmsggttmfpg
iaermqkeitalapssmkvkiiapperkysvwiggsilaslttfqqmwiskqeydesgps
ivhhkc
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5nblD (D:)
mdsevaalvidngsgmckagfagddapravfpsivgrprhqgimvgmgqkdsyvgdeaqs
krgiltlrypiehgivtnwddmekiwhhtfynelrvapeehpvllteapmnpksnrekmt
qimfetfnvpafyvsiqavlslyssgrttgivldsgdgvthvvpiyagfslphailridl
agrdltdylmkilsergysfsttaereivrdikeklcyvaldfeqemqtaaqsssieksy
elpdgqvitignerfrapealfhpsvlglesagidqttynsimkcdvdvrkelygnivms
ggttmfpgiaermqkeitalapssmkvkiiapperkysvwiggsilaslttfqqmwiskq
eydesgpsivhhkcf
Sequence, based on observed residues (ATOM records): (download)
>5nblD (D:)
dsevaalvidngsgmckagfagddapravfpsivgrprhgqkdsyvgdeaqskrgiltlr
ypiehgivtnwddmekiwhhtfynelrvapeehpvllteapmnpksnrekmtqimfetfn
vpafyvsiqavlslyssgrttgivldsgdgvthvvpiyagfslphailridlagrdltdy
lmkilsergysfsttaereivrdikeklcyvaldfeqemqtaaqsssieksyelpdgqvi
tignerfrapealfhpsvlglesagidqttynsimkcdvdvrkelygnivmsggttmfpg
iaermqkeitalapssmkvkiiapperkysvwiggsilaslttfqqmwiskqeydesgps
ivhhkc
- Chain 'E':
Sequence, based on SEQRES records: (download)
>5nblE (E:)
maqvqlvesgggsvqagdslrlsctasgrtftnygmgwfrqapgkerefvaaigrfgfpl
yysdsvkgrftisrdnakttvylqmhnlkpedtaiyfcaarnprataedvsaydywgqgt
qvtvsskgssawshpqfekgggsgggsggsawshpqfek
Sequence, based on observed residues (ATOM records): (download)
>5nblE (E:)
qvqlvesgggsvqagdslrlsctasgrtftnygmgwfrqapgkerefvaaigrfgfplyy
sdsvkgrftisrdnakttvylqmhnlkpedtaiyfcaarnprataedvsaydywgqgtqv
tv
- Chain 'F':
Sequence, based on SEQRES records: (download)
>5nblF (F:)
maqvqlvesgggsvqagdslrlsctasgrtftnygmgwfrqapgkerefvaaigrfgfpl
yysdsvkgrftisrdnakttvylqmhnlkpedtaiyfcaarnprataedvsaydywgqgt
qvtvsskgssawshpqfekgggsgggsggsawshpqfek
Sequence, based on observed residues (ATOM records): (download)
>5nblF (F:)
qvqlvesgggsvqagdslrlsctasgrtftnygmgwfrqapgkerefvaaigrfgfplyy
sdsvkgrftisrdnakttvylqmhnlkpedtaiyfcaarnprataedvsaydywgqgtqv
tvss
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.