PDB entry 5mr3

View 5mr3 on RCSB PDB site
Description: Crystal structure of red abalone egg VERL repeat 2 with linker in complex with sperm lysin at 1.8 A resolution
Class: cell adhesion
Keywords: cell adhesion, fertilization, egg-sperm interaction, gamete recognition, sperm receptor, egg coat, vitelline envelope, zp domain, zp-n domain, sperm acrosome, sperm penetration
Deposited on 2016-12-21, released 2017-06-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Egg-lysin
    Species: Haliotis rufescens [TaxId:6454]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mr3a_
  • Chain 'B':
    Compound: Vitelline envelope sperm lysin receptor
    Species: Haliotis rufescens [TaxId:6454]
    Gene: VERL
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8WR62 (3-End)
      • expression tag (2)
      • engineered mutation (120)
  • Chain 'C':
    Compound: Egg-lysin
    Species: Haliotis rufescens [TaxId:6454]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mr3c_
  • Chain 'D':
    Compound: Vitelline envelope sperm lysin receptor
    Species: Haliotis rufescens [TaxId:6454]
    Gene: VERL
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8WR62 (3-End)
      • expression tag (1-2)
  • Chain 'E':
    Compound: Egg-lysin
    Species: Haliotis rufescens [TaxId:6454]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mr3e_
  • Chain 'F':
    Compound: Vitelline envelope sperm lysin receptor
    Species: Haliotis rufescens [TaxId:6454]
    Gene: VERL
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8WR62 (3-End)
      • expression tag (2)
  • Chain 'G':
    Compound: Egg-lysin
    Species: Haliotis rufescens [TaxId:6454]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5mr3g_
  • Chain 'H':
    Compound: Vitelline envelope sperm lysin receptor
    Species: Haliotis rufescens [TaxId:6454]
    Gene: VERL
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8WR62 (3-End)
      • expression tag (2)
  • Heterogens: GOL, CL, NAG, PGE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5mr3A (A:)
rswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqt
hwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymee
inrmrpadvpvkymgk

    Sequence, based on observed residues (ATOM records): (download) 
    >5mr3A (A:)
flnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwanymlwi
nkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinrmrpadv
pvkym

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5mr3C (C:)
rswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqt
hwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymee
inrmrpadvpvkymgk

    Sequence, based on observed residues (ATOM records): (download) 
    >5mr3C (C:)
pkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwanyml
winkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinrmrpa
dvpvkym

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5mr3E (E:)
rswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqt
hwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymee
inrmrpadvpvkymgk

    Sequence, based on observed residues (ATOM records): (download) 
    >5mr3E (E:)
swhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqth
wanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeei
nrmrpadvpvkym

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5mr3G (G:)
rswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqt
hwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymee
inrmrpadvpvkymgk

    Sequence, based on observed residues (ATOM records): (download) 
    >5mr3G (G:)
vepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwany
mlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinrmr
padvpvkym

  • Chain 'H':
    No sequence available.