PDB entry 5m63
View 5m63 on RCSB PDB site
Description: Crystal structure of group B Streptococcus type III DP2 oligosaccharide bound to Fab NVS-1-19-5
Class: immune system
Keywords: GBS, Fab, oligosaccharide, vaccine, immune system
Deposited on
2016-10-24, released
2017-05-03
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-06-29.
Experiment type: XRAY
Resolution: 2.74 Å
R-factor: N/A
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: H chain of Fab NVS-1-19-5
Species: Oryctolagus cuniculus [TaxId:9986]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: L chain of Fab NVS-1-19-5
Species: Oryctolagus cuniculus [TaxId:9986]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5m63l1, d5m63l2 - Chain 'M':
Compound: H chain of Fab NVS-1-19-5
Species: Oryctolagus cuniculus [TaxId:9986]
Database cross-references and differences (RAF-indexed):
- Chain 'N':
Compound: L chain of Fab NVS-1-19-5
Species: Oryctolagus cuniculus [TaxId:9986]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5m63n1, d5m63n2 - Heterogens: EDO, 7GW, HOH
PDB Chain Sequences:
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>5m63L (L:)
mdtraptqllgllllwlpgatfavvltqtpssvsaavggsvtiscqssqslynnnrlawy
qqkagqppklliykastlesgvpsrfkgsgagtqftltisdvvcddaatyycagyksnsd
dgtafgggtevvvkgdpvaptvlifppaadqvatgtvtivcvankyfpdvtvtwevdgtt
qttgiensktpqnsadctynlsstltltstqynshkeytckvtqgttsvvqsfnrgdca
Sequence, based on observed residues (ATOM records): (download)
>5m63L (L:)
vvltqtpssvsaavggsvtiscqssqslynnnrlawyqqkagqppklliykastlesgvp
srfkgsgagtqftltisdvvcddaatyycagyksnsddgtafgggtevvvkgdpvaptvl
ifppaadqvatgtvtivcvankyfpdvtvtwevdgttqttgiensktpqnsadctynlss
tltltstqynshkeytckvtqgttsvvqsfnrgdc
- Chain 'M':
No sequence available.
- Chain 'N':
Sequence, based on SEQRES records: (download)
>5m63N (N:)
mdtraptqllgllllwlpgatfavvltqtpssvsaavggsvtiscqssqslynnnrlawy
qqkagqppklliykastlesgvpsrfkgsgagtqftltisdvvcddaatyycagyksnsd
dgtafgggtevvvkgdpvaptvlifppaadqvatgtvtivcvankyfpdvtvtwevdgtt
qttgiensktpqnsadctynlsstltltstqynshkeytckvtqgttsvvqsfnrgdca
Sequence, based on observed residues (ATOM records): (download)
>5m63N (N:)
vvltqtpssvsaavggsvtiscqssqslynnnrlawyqqkagqppklliykastlesgvp
srfkgsgagtqftltisdvvcddaatyycagyksnsddgtafgggtevvvkgdpvaptvl
ifppaadqvatgtvtivcvankyfpdvtvtwevdgttqttgiensktpqnsadctynlss
tltltstqynshkeytckvtqgttsvvqsfnrgdca