PDB entry 5m62

View 5m62 on RCSB PDB site
Description: Structure of the Mus musclus Langerin carbohydrate recognition domain in complex with glucose
Class: immune system
Keywords: C-TYPE LECTIN, GLYCOPROTEIN, CARBOHYDRATE BINDING PROTEIN, CALCIUM BINDING, CRD Domain, LECTIN, IMMUNE SYSTEM
Deposited on 2016-10-24, released 2016-12-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: C-type lectin domain family 4 member K
    Species: Mus musculus [TaxId:10090]
    Gene: CD207, CLEC4K
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8VBX4 (3-End)
      • expression tag (1-2)
      • engineered mutation (117)
    Domains in SCOPe 2.08: d5m62a1, d5m62a2
  • Chain 'B':
    Compound: C-type lectin domain family 4 member K
    Species: Mus musculus [TaxId:10090]
    Gene: CD207, CLEC4K
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8VBX4 (3-End)
      • expression tag (1-2)
      • engineered mutation (117)
    Domains in SCOPe 2.08: d5m62b1, d5m62b2
  • Heterogens: CA, GOL, P6G, BGC, GLC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5m62A (A:)
magilemvargwkyfsgnfyyfsrtpktwysaeqfcisrkahltsvsseseqkflykaad
giphwigltkagsegdwywvdqtsfnkeqsrrfwipgepnnagnnehcanirvsalkswn
dgpcdntflfickrpyvqttegtwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >5m62A (A:)
agilemvargwkyfsgnfyyfsrtpktwysaeqfcisrkahltsvsseseqkflykaadg
iphwigltkagsegdwywvdqtsfnkeqsrrfwipgepnnagnnehcanirvsalkswnd
gpcdntflfickrpyv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5m62B (B:)
magilemvargwkyfsgnfyyfsrtpktwysaeqfcisrkahltsvsseseqkflykaad
giphwigltkagsegdwywvdqtsfnkeqsrrfwipgepnnagnnehcanirvsalkswn
dgpcdntflfickrpyvqttegtwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >5m62B (B:)
agilemvargwkyfsgnfyyfsrtpktwysaeqfcisrkahltsvsseseqkflykaadg
iphwigltkagsegdwywvdqtsfnkeqsrrfwipgepnnagnnehcanirvsalkswnd
gpcdntflfickrpyv