PDB entry 5m30

View 5m30 on RCSB PDB site
Description: Structure of TssK from T6SS EAEC in complex with nanobody nb18
Class: secretion system
Keywords: TssK T6SS, SECRETION SYSTEM
Deposited on 2016-10-13, released 2017-06-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-09-06, with a file datestamp of 2017-09-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Type VI secretion protein
    Species: Escherichia coli [TaxId:562]
    Gene: ACU81_04625
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Type VI secretion protein
    Species: Escherichia coli [TaxId:562]
    Gene: ACU81_04625
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Type VI secretion protein
    Species: Escherichia coli [TaxId:562]
    Gene: ACU81_04625
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Anti-vesicular stomatitis virus N VHH
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 5M30 (0-End)
    Domains in SCOPe 2.08: d5m30d1, d5m30d2
  • Chain 'E':
    Compound: Anti-vesicular stomatitis virus N VHH
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 5M30 (0-End)
    Domains in SCOPe 2.08: d5m30e1, d5m30e2
  • Chain 'F':
    Compound: Anti-vesicular stomatitis virus N VHH
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 5M30 (0-End)
    Domains in SCOPe 2.08: d5m30f1, d5m30f2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5m30D (D:)
qvqlvesggglvqaggtlklscaasgsisgivvmawyrqapgkqrelvasitsggttnya
dsvkgrftiskdnaentlylrmnslkpedtavyyckaffrrdyvgydywgqgtqvtvssh
hhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5m30D (D:)
qvqlvesggglvqaggtlklscaasgsisgivvmawyrqapgkqrelvasitsggttnya
dsvkgrftiskdnaentlylrmnslkpedtavyyckaffrrdyvgydywgqgtqvtvss

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5m30E (E:)
qvqlvesggglvqaggtlklscaasgsisgivvmawyrqapgkqrelvasitsggttnya
dsvkgrftiskdnaentlylrmnslkpedtavyyckaffrrdyvgydywgqgtqvtvssh
hhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5m30E (E:)
qvqlvesggglvqaggtlklscaasgsisgivvmawyrqapgkqrelvasitsggttnya
dsvkgrftiskdnaentlylrmnslkpedtavyyckaffrrdyvgydywgqgtqvtvssh
hhh

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5m30F (F:)
qvqlvesggglvqaggtlklscaasgsisgivvmawyrqapgkqrelvasitsggttnya
dsvkgrftiskdnaentlylrmnslkpedtavyyckaffrrdyvgydywgqgtqvtvssh
hhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5m30F (F:)
qvqlvesggglvqaggtlklscaasgsisgivvmawyrqapgkqrelvasitsggttnya
dsvkgrftiskdnaentlylrmnslkpedtavyyckaffrrdyvgydywgqgtqvtvssh
hh