PDB entry 5lu4

View 5lu4 on RCSB PDB site
Description: C4-type pyruvate phosphate dikinase: conformational intermediate of central domain in the swiveling mechanism
Class: transferase
Keywords: phosphotransferase, nucleotide binding, conformational transition, swiveling mechanism, transferase
Deposited on 2016-09-08, released 2017-05-24
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-05-24, with a file datestamp of 2017-05-19.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyruvate, phosphate dikinase, chloroplastic
    Species: Flaveria trinervia [TaxId:4227]
    Gene: PPDK, PDK
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5lu4a1, d5lu4a2, d5lu4a3
  • Chain 'B':
    Compound: Pyruvate, phosphate dikinase, chloroplastic
    Species: Flaveria trinervia [TaxId:4227]
    Gene: PPDK, PDK
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5lu4b1, d5lu4b2, d5lu4b3
  • Heterogens: ADP, MG, PYR, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5lu4A (A:)
kkrvftfgkgrsegnrdmksllggkganlaemssiglsvppgltisteaceeyqqngksl
ppglwdeisegldyvqkemsaslgdpskplllsvrsgaaismpgmmdtvlnlglndevva
glagksgarfaydsyrrfldmfgnvvmgiphslfdekleqmkaekgihldtdltaadlkd
lvekyknvyveakgekfptdpkkqlelavnavfdswdsprankyrsinqitglkgtavni
qsmvfgnmgntsgtgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmp
eaykelvenceilerhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvnegli
dtrtaikrvetqhldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwha
qgksailvrtetspedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvndd
mkiftigdrvikegdwlslngttgevilgkqllappamsndleifmswadqarrlkvman
adtpndaltarnngaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyq
rsdfegiframdglpvtirlldpplheflpegdlehivnelavdtgmsadeiyskienls
evnpmlgfrgcrlgisypeltemqvraifqaavsmtnqgvtvipeimvplvgtpqelrhq
isvirgvaanvfaemgvtleykvgtmieipraaliaeeigkeadffsfgtndltqmtfgy
srddvgkflqiylaqgilqhdpfevidqkgvgqlikmatekgraanpslkvgicgehgge
pssvaffdgvgldyvscspfrvpiarlaaaqviv

    Sequence, based on observed residues (ATOM records): (download) 
    >5lu4A (A:)
kkrvftfgkgrsegnrdmksllggkganlaemssiglsvppgltisteaceeyqqngksl
ppglwdeisegldyvqkemsaslgdpskplllsvrsgaaismpgmmdtvlnlglndevva
glagksgarfaydsyrrfldmfgnvvmgiphslfdekleqmkaekgihldtdltaadlkd
lvekyknvyveakgekfptdpkkqlelavnavfdswdsprankyrsinqitglkgtavni
qsmvfgnmgntsgtgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmp
eaykelvenceilerhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvnegli
dtrtaikrvetqhldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwha
qgksailvrtetspedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvndd
mkiftigdrvikegdwlslngttgevilgkqllappamsndleifmswadqarrlkvman
adtpndaltarnngaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyq
rsdfegiframdglpvtirlldpplhefliyskienlsevnpmlgfrgcrlgisypelte
mqvraifqaavsmtnqgvtvipeimvplvgtpqelrhqisvirgvaanvfaemgvtleyk
vgtmieipraaliaeeigkeadffsfgtndltqmtfgysrddvgkflqiylaqgilqhdp
fevidqkgvgqlikmatekgraanpslkvgicgehggepssvaffdgvgldyvscspfrv
piarlaaaqv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5lu4B (B:)
kkrvftfgkgrsegnrdmksllggkganlaemssiglsvppgltisteaceeyqqngksl
ppglwdeisegldyvqkemsaslgdpskplllsvrsgaaismpgmmdtvlnlglndevva
glagksgarfaydsyrrfldmfgnvvmgiphslfdekleqmkaekgihldtdltaadlkd
lvekyknvyveakgekfptdpkkqlelavnavfdswdsprankyrsinqitglkgtavni
qsmvfgnmgntsgtgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmp
eaykelvenceilerhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvnegli
dtrtaikrvetqhldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwha
qgksailvrtetspedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvndd
mkiftigdrvikegdwlslngttgevilgkqllappamsndleifmswadqarrlkvman
adtpndaltarnngaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyq
rsdfegiframdglpvtirlldpplheflpegdlehivnelavdtgmsadeiyskienls
evnpmlgfrgcrlgisypeltemqvraifqaavsmtnqgvtvipeimvplvgtpqelrhq
isvirgvaanvfaemgvtleykvgtmieipraaliaeeigkeadffsfgtndltqmtfgy
srddvgkflqiylaqgilqhdpfevidqkgvgqlikmatekgraanpslkvgicgehgge
pssvaffdgvgldyvscspfrvpiarlaaaqviv

    Sequence, based on observed residues (ATOM records): (download) 
    >5lu4B (B:)
kkrvftfgkgrsegnrdmksllggkganlaemssiglsvppgltisteaceeyqqngksl
ppglwdeisegldyvqkemsaslgdpskplllsvrsgaaismpgmmdtvlnlglndevva
glagksgarfaydsyrrfldmfgnvvmgiphslfdekleqmkaekgihldtdltaadlkd
lvekyknvyveakgekfptdpkkqlelavnavfdswdsprankyrsinqitglkgtavni
qsmvfgnmgntsgtgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmp
eaykelvenceilerhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvnegli
dtrtaikrvetqhldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwha
qgksailvrtetspedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvndd
mkiftigdrvikegdwlslngttgevilgkqllappamsndleifmswadqarrlkvman
adtpndaltarnngaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyq
rsdfegiframdglpvtirlldpplheflkienlsevnpmlgfrgcrlgisypeltemqv
raifqaavsmtnqgvtvipeimvplvgtpqelrhqisvirgvaanvfaemgvtleykvgt
mieipraaliaeeigkeadffsfgtndltqmtfgysrddvgkflqiylaqgilqhdpfev
idqkgvgqlikmatekgraanpslkvgicgehggepssvaffdgvgldyvscspfrvpia
rlaaaqv