PDB entry 5ltp

View 5ltp on RCSB PDB site
Description: Structure of the Yellow-Green Fluorescent Protein mNeonGreen from Branchiostoma lanceolatum at the acidic pH 4.5
Class: fluorescent protein
Keywords: fluorescent protein
Deposited on 2016-09-07, released 2016-12-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-12-21, with a file datestamp of 2016-12-16.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: mNeonGreen
    Species: Branchiostoma lanceolatum [TaxId:7740]
    Gene: blFP-Y3
    Database cross-references and differences (RAF-indexed):
    • PDB 5LTP
    Domains in SCOPe 2.08: d5ltpa_
  • Chain 'B':
    Compound: mNeonGreen
    Species: Branchiostoma lanceolatum [TaxId:7740]
    Gene: blFP-Y3
    Database cross-references and differences (RAF-indexed):
    • PDB 5LTP
    Domains in SCOPe 2.08: d5ltpb1, d5ltpb2
  • Chain 'C':
    Compound: mNeonGreen
    Species: Branchiostoma lanceolatum [TaxId:7740]
    Gene: blFP-Y3
    Database cross-references and differences (RAF-indexed):
    • PDB 5LTP
    Domains in SCOPe 2.08: d5ltpc1, d5ltpc2
  • Chain 'D':
    Compound: mNeonGreen
    Species: Branchiostoma lanceolatum [TaxId:7740]
    Gene: blFP-Y3
    Database cross-references and differences (RAF-indexed):
    • PDB 5LTP
    Domains in SCOPe 2.08: d5ltpd1, d5ltpd2
  • Chain 'E':
    Compound: mNeonGreen
    Species: Branchiostoma lanceolatum [TaxId:7740]
    Gene: blFP-Y3
    Database cross-references and differences (RAF-indexed):
    • PDB 5LTP
    Domains in SCOPe 2.08: d5ltpe1, d5ltpe2
  • Chain 'F':
    Compound: mNeonGreen
    Species: Branchiostoma lanceolatum [TaxId:7740]
    Gene: blFP-Y3
    Database cross-references and differences (RAF-indexed):
    • PDB 5LTP
    Domains in SCOPe 2.08: d5ltpf1, d5ltpf2
  • Heterogens: CL, FLC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ltpA (A:)
mrgshhhhhhgmasmtggqqmgrdlyddddkdplemvskgeednmaslpathelhifgsi
ngvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvphigygfhqylpypdgmspfq
aamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaqvkgtgfpadgpvmtnslta
adwcrskktypndktiistfkwsyttgngkryrstarttytfakpmaanylknqpmyvfr
ktelkhsktelnfkewqkaftdvmgmdelyk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ltpA (A:)
ednmaslpathelhifgsingvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvph
igygfhqylpypdgmspfqaamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaq
vkgtgfpadgpvmtnsltaadwcrskktypndktiistfkwsyttgngkryrstarttyt
fakpmaanylknqpmyvfrktelkhsktelnfkewqkaftd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ltpB (B:)
mrgshhhhhhgmasmtggqqmgrdlyddddkdplemvskgeednmaslpathelhifgsi
ngvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvphigygfhqylpypdgmspfq
aamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaqvkgtgfpadgpvmtnslta
adwcrskktypndktiistfkwsyttgngkryrstarttytfakpmaanylknqpmyvfr
ktelkhsktelnfkewqkaftdvmgmdelyk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ltpB (B:)
ednmaslpathelhifgsingvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvph
igygfhqylpypdgmspfqaamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaq
vkgtgfpadgpvmtnsltaadwcrskktypndktiistfkwsyttgngkryrstarttyt
fakpmaanylknqpmyvfrktelkhsktelnfkewqkaftdvmgmdel

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ltpC (C:)
mrgshhhhhhgmasmtggqqmgrdlyddddkdplemvskgeednmaslpathelhifgsi
ngvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvphigygfhqylpypdgmspfq
aamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaqvkgtgfpadgpvmtnslta
adwcrskktypndktiistfkwsyttgngkryrstarttytfakpmaanylknqpmyvfr
ktelkhsktelnfkewqkaftdvmgmdelyk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ltpC (C:)
maslpathelhifgsingvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvphigy
gfhqylpypdgmspfqaamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaqvkg
tgfpadgpvmtnsltaadwcrskktypndktiistfkwsyttgngkryrstarttytfak
pmaanylknqpmyvfrktelkhsktelnfkewqkaftdvmgmdel

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ltpD (D:)
mrgshhhhhhgmasmtggqqmgrdlyddddkdplemvskgeednmaslpathelhifgsi
ngvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvphigygfhqylpypdgmspfq
aamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaqvkgtgfpadgpvmtnslta
adwcrskktypndktiistfkwsyttgngkryrstarttytfakpmaanylknqpmyvfr
ktelkhsktelnfkewqkaftdvmgmdelyk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ltpD (D:)
maslpathelhifgsingvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvphigy
gfhqylpypdgmspfqaamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaqvkg
tgfpadgpvmtnsltaadwcrskktypndktiistfkwsyttgngkryrstarttytfak
pmaanylknqpmyvfrktelkhsktelnfkewqkaftdvmgmdely

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5ltpE (E:)
mrgshhhhhhgmasmtggqqmgrdlyddddkdplemvskgeednmaslpathelhifgsi
ngvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvphigygfhqylpypdgmspfq
aamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaqvkgtgfpadgpvmtnslta
adwcrskktypndktiistfkwsyttgngkryrstarttytfakpmaanylknqpmyvfr
ktelkhsktelnfkewqkaftdvmgmdelyk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ltpE (E:)
aslpathelhifgsingvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvphigyg
fhqylpypdgmspfqaamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaqvkgt
gfpadgpvmtnsltaadwcrskktypndktiistfkwsyttgngkryrstarttytfakp
maanylknqpmyvfrktelkhsktelnfkewqkaftdvmgmdel

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5ltpF (F:)
mrgshhhhhhgmasmtggqqmgrdlyddddkdplemvskgeednmaslpathelhifgsi
ngvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvphigygfhqylpypdgmspfq
aamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaqvkgtgfpadgpvmtnslta
adwcrskktypndktiistfkwsyttgngkryrstarttytfakpmaanylknqpmyvfr
ktelkhsktelnfkewqkaftdvmgmdelyk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ltpF (F:)
maslpathelhifgsingvdfdmvgqgtgnpndgyeelnlkstkgdlqfspwilvphigy
gfhqylpypdgmspfqaamvdgsgyqvhrtmqfedgasltvnyrytyegshikgeaqvkg
tgfpadgpvmtnsltaadwcrskktypndktiistfkwsyttgngkryrstarttytfak
pmaanylknqpmyvfrktelkhsktelnfkewqkaftdvmgmdely