PDB entry 5lkc

View 5lkc on RCSB PDB site
Description: Protruding domain of GII.17 norovirus Kawasaki308 in complex with HBGA type A (triglycan)
Class: viral protein
Keywords: Norovirus, Virus capsid, HBGA, Protruding domain, P domain, viral protein
Deposited on 2016-07-22, released 2017-05-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.81 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein
    Species: Norovirus GII [TaxId:122929]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5lkca1, d5lkca2
  • Chain 'B':
    Compound: Major capsid protein
    Species: Norovirus GII [TaxId:122929]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5lkcb1, d5lkcb2
  • Heterogens: EDO, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5lkcA (A:)
gskpfslpiltlseltnsrfpvpidslftaqnnvlqvqcqngrctldgelqgttqllptg
icafrgrvtaqinqrdrwhmqlqnlngttydptddvpaplgtpdfkgvvfgmvsqrnvgn
dapgstraqqawvstyspqfvpklgsvnlrisdnddfqfqptkftpvgvnddddghpfrq
welpnysgeltlnmnlappvapnfpgeqllffrsfvpcsggynqgiidclipqewiqhfy
qesapsqsdvaliryvnpdtgrtlfeaklhrsgyitvahsgdyplvvpanghfrfdswvn
qfyslapm

    Sequence, based on observed residues (ATOM records): (download) 
    >5lkcA (A:)
skpfslpiltlseltnsrfpvpidslftaqnnqvqcqngrctldgelqgttqllptgica
frgrvtaqinqrdrwhmqlqnlngttydptddvpaplgtpdfkgvvfgmvsqrnvgndap
gstraqqawvstyspqfvpklgsvnlrisdnddfqfqptkftpvgvnddddghpfrqwel
pnysgeltlnmnlappvapnfpgeqllffrsfvpcsggynqgiidclipqewiqhfyqes
apsqsdvaliryvnpdtgrtlfeaklhrsgyitvahsgdyplvvpanghfrfdswvnqfy
slapm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5lkcB (B:)
gskpfslpiltlseltnsrfpvpidslftaqnnvlqvqcqngrctldgelqgttqllptg
icafrgrvtaqinqrdrwhmqlqnlngttydptddvpaplgtpdfkgvvfgmvsqrnvgn
dapgstraqqawvstyspqfvpklgsvnlrisdnddfqfqptkftpvgvnddddghpfrq
welpnysgeltlnmnlappvapnfpgeqllffrsfvpcsggynqgiidclipqewiqhfy
qesapsqsdvaliryvnpdtgrtlfeaklhrsgyitvahsgdyplvvpanghfrfdswvn
qfyslapm

    Sequence, based on observed residues (ATOM records): (download) 
    >5lkcB (B:)
gskpfslpiltlseltnsrfpvpidslftaqnnqvqcqngrctldgelqgttqllptgic
afrgrvtaqinqrdrwhmqlqnlngttydptddvpaplgtpdfkgvvfgmvsqrnvgnda
pgstraqqawvstyspqfvpklgsvnlrisdnddfqfqptkftpvgvnddddghpfrqwe
lpnysgeltlnmnlappvapnfpgeqllffrsfvpcsggynqgiidclipqewiqhfyqe
sapsqsdvaliryvnpdtgrtlfeaklhrsgyitvahsgdyplvvpanghfrfdswvnqf
yslapm