PDB entry 5lhv

View 5lhv on RCSB PDB site
Description: X-ray structure of uridine phosphorylase from Vibrio cholerae in complex with uridine and sulfate ion at 1.29 A resolution
Class: transferase
Keywords: TRANSFERASE, Rossmann Fold
Deposited on 2016-07-13, released 2017-08-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-08-02, with a file datestamp of 2017-07-28.
Experiment type: XRAY
Resolution: 1.29 Å
R-factor: N/A
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5lhva_
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5lhvb_
  • Chain 'C':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5lhvc_
  • Chain 'D':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5lhvd_
  • Chain 'E':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5lhve_
  • Chain 'F':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5lhvf_
  • Heterogens: SO4, URI, URA, MG, CL, NA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5lhvA (A:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5lhvB (B:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5lhvC (C:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5lhvD (D:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >5lhvD (D:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqpdhatlketearsikvvv
eaarkmlk

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5lhvE (E:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5lhvF (F:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk