PDB entry 5ldz

View 5ldz on RCSB PDB site
Description: Quadruple space group ambiguity due to rotational and translational non-crystallographic symmetry in human liver fructose-1,6-bisphosphatase
Class: hydrolase
Keywords: phosphoric monoester, allosteric enzyme, carbohydrate, metabolism, gluconeogenesis, hydrolase
Deposited on 2016-06-29, released 2016-10-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-18, with a file datestamp of 2018-04-13.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ldza_
  • Chain 'B':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ldzb_
  • Chain 'C':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ldzc_
  • Chain 'D':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ldzd_
  • Chain 'E':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ldze_
  • Chain 'F':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ldzf_
  • Heterogens: ZN, SO4, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ldzA (A:)
madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
eavldviptdihqrapvilgspddvleflkvyekhsaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ldzA (A:)
pfdtdvntltrfvmeegtgeltqllnslctavkaissavrkagiahkkldvlsndlvmnm
lkssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkkst
depsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvkikk
kgkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggifly
pankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspddv
leflkvyekhs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ldzB (B:)
madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
eavldviptdihqrapvilgspddvleflkvyekhsaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ldzB (B:)
pfdtdvntltrfvmeeggtgeltqllnslctavkaissavrkagiakkldvlsndlvmnm
lkssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkkst
depsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvkikk
kgkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggifly
pankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspddv
leflkvyekhsa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ldzC (C:)
madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
eavldviptdihqrapvilgspddvleflkvyekhsaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ldzC (C:)
pfdtdvntltrfvmeegtgeltqllnslctavkaissavrkagiakkldvlsndlvmnml
kssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkkstd
epsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvkikkk
gkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggiflyp
ankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspddvl
eflkvyekhsa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ldzD (D:)
madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
eavldviptdihqrapvilgspddvleflkvyekhsaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ldzD (D:)
pfdtdvntltrfvmeeggtgeltqllnslctavkaissavrkagiahlkkldvlsndlvm
nmlkssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkk
stdepsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvki
kkkgkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggif
lypankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspd
dvleflkvyekhs

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5ldzE (E:)
madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
eavldviptdihqrapvilgspddvleflkvyekhsaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ldzE (E:)
pfdtdvntltrfvmeegtgeltqllnslctavkaissavrkagiahkkldvlsndlvmnm
lkssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkkst
depsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvkikk
kgkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggifly
pankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspddv
leflkvyekhs

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5ldzF (F:)
madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
eavldviptdihqrapvilgspddvleflkvyekhsaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ldzF (F:)
pfdtdvntltrfvmeeggtgeltqllnslctavkaissavrkagiahlkkldvlsndlvm
nmlkssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkk
stdepsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvki
kkkgkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggif
lypankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspd
dvleflkvyekhsa