PDB entry 5ldz

View 5ldz on RCSB PDB site
Description: Quadruple space group ambiguity due to rotational and translational non-crystallographic symmetry in human liver fructose-1,6-bisphosphatase
Class: hydrolase
Keywords: phosphoric monoester, allosteric enzyme, carbohydrate, metabolism, gluconeogenesis, hydrolase
Deposited on 2016-06-29, released 2016-10-26
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-11-09, with a file datestamp of 2016-11-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ldza_
  • Chain 'B':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ldzb_
  • Chain 'C':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ldzc_
  • Chain 'D':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ldzd_
  • Chain 'E':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ldze_
  • Chain 'F':
    Compound: Fructose-1,6-bisphosphatase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: FBP1, FBP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ldzf_
  • Heterogens: ZN, SO4, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5ldzA (A:)
    madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
    agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
    ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
    gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
    ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
    eavldviptdihqrapvilgspddvleflkvyekhsaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ldzA (A:)
    pfdtdvntltrfvmeegtgeltqllnslctavkaissavrkagiahkkldvlsndlvmnm
    lkssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkkst
    depsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvkikk
    kgkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggifly
    pankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspddv
    leflkvyekhs
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5ldzB (B:)
    madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
    agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
    ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
    gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
    ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
    eavldviptdihqrapvilgspddvleflkvyekhsaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ldzB (B:)
    pfdtdvntltrfvmeeggtgeltqllnslctavkaissavrkagiakkldvlsndlvmnm
    lkssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkkst
    depsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvkikk
    kgkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggifly
    pankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspddv
    leflkvyekhsa
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5ldzC (C:)
    madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
    agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
    ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
    gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
    ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
    eavldviptdihqrapvilgspddvleflkvyekhsaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ldzC (C:)
    pfdtdvntltrfvmeegtgeltqllnslctavkaissavrkagiakkldvlsndlvmnml
    kssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkkstd
    epsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvkikkk
    gkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggiflyp
    ankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspddvl
    eflkvyekhsa
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5ldzD (D:)
    madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
    agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
    ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
    gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
    ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
    eavldviptdihqrapvilgspddvleflkvyekhsaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ldzD (D:)
    pfdtdvntltrfvmeeggtgeltqllnslctavkaissavrkagiahlkkldvlsndlvm
    nmlkssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkk
    stdepsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvki
    kkkgkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggif
    lypankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspd
    dvleflkvyekhs
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >5ldzE (E:)
    madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
    agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
    ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
    gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
    ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
    eavldviptdihqrapvilgspddvleflkvyekhsaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ldzE (E:)
    pfdtdvntltrfvmeegtgeltqllnslctavkaissavrkagiahkkldvlsndlvmnm
    lkssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkkst
    depsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvkikk
    kgkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggifly
    pankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspddv
    leflkvyekhs
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >5ldzF (F:)
    madqapfdtdvntltrfvmeegrkargtgeltqllnslctavkaissavrkagiahlygi
    agstnvtgdqvkkldvlsndlvmnmlkssfatcvlvseedkhaiivepekrgkyvvcfdp
    ldgssnidclvsvgtifgiyrkkstdepsekdalqpgrnlvaagyalygsatmlvlamdc
    gvncfmldpaigefilvdkdvkikkkgkiyslnegyardfdpavteyiqrkkfppdnsap
    ygaryvgsmvadvhrtlvyggiflypankkspngklrllyecnpmayvmekaggmattgk
    eavldviptdihqrapvilgspddvleflkvyekhsaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ldzF (F:)
    pfdtdvntltrfvmeeggtgeltqllnslctavkaissavrkagiahlkkldvlsndlvm
    nmlkssfatcvlvseedkhaiivepekrgkyvvcfdpldgssnidclvsvgtifgiyrkk
    stdepsekdalqpgrnlvaagyalygsatmlvlamdcgvncfmldpaigefilvdkdvki
    kkkgkiyslnegyardfdpavteyiqrkkfppdnsapygaryvgsmvadvhrtlvyggif
    lypankkspngklrllyecnpmayvmekaggmattgkeavldviptdihqrapvilgspd
    dvleflkvyekhsa