PDB entry 5ldo

View 5ldo on RCSB PDB site
Description: Crystal structure of E.coli LigT complexed with 3'-AMP
Class: hydrolase
Keywords: Enzyme, 2H phosphoesterase/ligase, hydrolase
Deposited on 2016-06-27, released 2017-01-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-02-08, with a file datestamp of 2017-02-03.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA 2',3'-cyclic phosphodiesterase
    Species: Escherichia coli BL21(DE3) [TaxId:469008]
    Gene: thpR, ECBD_3472
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ldoa_
  • Chain 'B':
    Compound: RNA 2',3'-cyclic phosphodiesterase
    Species: Escherichia coli BL21(DE3) [TaxId:469008]
    Gene: thpR, ECBD_3472
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ldob_
  • Chain 'C':
    Compound: RNA 2',3'-cyclic phosphodiesterase
    Species: Escherichia coli BL21(DE3) [TaxId:469008]
    Gene: thpR, ECBD_3472
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ldoc_
  • Chain 'D':
    Compound: RNA 2',3'-cyclic phosphodiesterase
    Species: Escherichia coli BL21(DE3) [TaxId:469008]
    Gene: thpR, ECBD_3472
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ldod_
  • Heterogens: 3AM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ldoA (A:)
gmsepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekeka
lsllagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsn
rpfhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ldoA (A:)
epqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekalsl
lagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsnrpf
hphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ldoB (B:)
gmsepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekeka
lsllagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsn
rpfhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ldoB (B:)
epqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekalsl
lagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfpfhphi
tllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ldoC (C:)
gmsepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekeka
lsllagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsn
rpfhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ldoC (C:)
epqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekalsl
lagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarpfhphitllr
daseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ldoD (D:)
gmsepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekeka
lsllagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsn
rpfhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ldoD (D:)
sepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekals
llagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgfhphitl
lrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq