PDB entry 5ldm
View 5ldm on RCSB PDB site
Description: Crystal structure of E.coli LigT complexed with 2'-AMP
Class: hydrolase
Keywords: Enzyme, 2H phosphoesterase/ligase, hydrolase
Deposited on
2016-06-27, released
2017-01-18
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-01-17, with a file datestamp of
2018-01-12.
Experiment type: XRAY
Resolution: 2.46 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: RNA 2',3'-cyclic phosphodiesterase
Species: Escherichia coli (strain B / BL21-DE3) [TaxId:469008]
Gene: thpR, ECBD_3472
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5ldma_ - Chain 'B':
Compound: RNA 2',3'-cyclic phosphodiesterase
Species: Escherichia coli (strain B / BL21-DE3) [TaxId:469008]
Gene: thpR, ECBD_3472
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5ldmb_ - Heterogens: 2AM, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5ldmA (A:)
gmsepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekeka
lsllagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsn
rpfhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq
Sequence, based on observed residues (ATOM records): (download)
>5ldmA (A:)
epqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekalsl
lagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsnrpf
hphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5ldmB (B:)
gmsepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekeka
lsllagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsn
rpfhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq
Sequence, based on observed residues (ATOM records): (download)
>5ldmB (B:)
sepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekals
llagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfpfhph
itllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq