PDB entry 5ldi
View 5ldi on RCSB PDB site
Description: Crystal structure of E.coli LigT in apo form
Class: hydrolase
Keywords: Enzyme, 2H phosphoesterase/ligase, Hydrolase
Deposited on
2016-06-27, released
2017-01-18
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-02-08, with a file datestamp of
2017-02-03.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: RNA 2',3'-cyclic phosphodiesterase
Species: Escherichia coli BL21(DE3) [TaxId:469008]
Gene: thpR, ECBD_3472
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5ldia_ - Chain 'B':
Compound: RNA 2',3'-cyclic phosphodiesterase
Species: Escherichia coli BL21(DE3) [TaxId:469008]
Gene: thpR, ECBD_3472
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5ldib_ - Chain 'C':
Compound: RNA 2',3'-cyclic phosphodiesterase
Species: Escherichia coli BL21(DE3) [TaxId:469008]
Gene: thpR, ECBD_3472
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5ldic_ - Chain 'D':
Compound: RNA 2',3'-cyclic phosphodiesterase
Species: Escherichia coli BL21(DE3) [TaxId:469008]
Gene: thpR, ECBD_3472
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5ldid_ - Heterogens: CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5ldiA (A:)
gmsepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekeka
lsllagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsn
rpfhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq
Sequence, based on observed residues (ATOM records): (download)
>5ldiA (A:)
sepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekals
llagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsnrp
fhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5ldiB (B:)
gmsepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekeka
lsllagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsn
rpfhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq
Sequence, based on observed residues (ATOM records): (download)
>5ldiB (B:)
epqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekalsl
lagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfpfhphi
tllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5ldiC (C:)
gmsepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekeka
lsllagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsn
rpfhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq
Sequence, based on observed residues (ATOM records): (download)
>5ldiC (C:)
sepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekals
llagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcrpfhph
itllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5ldiD (D:)
gmsepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekeka
lsllagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsn
rpfhphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq
Sequence, based on observed residues (ATOM records): (download)
>5ldiD (D:)
sepqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekals
llagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgsnrpfhp
hitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq