PDB entry 5l9m

View 5l9m on RCSB PDB site
Description: structure of agrobacterium tumefaciens b6 strain pbp soca complexed with deoxyfructosylglutamine (dfg)
Deposited on 2016-06-10, released 2016-09-21
Made obsolete by 6hqh on 2018-10-31

The last revision was dated 2018-10-31, with a file datestamp of 2018-10-26.
Experiment type: XRAY
Resolution: 1.93 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: socA, Atu5006
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SNW, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >5l9mA (A:)
    mgsshhhhhhssglvprgshmdnplglidpttisvgtmgdakpyafttadgnftgfdiel
    flnvagrlgfkkeqvvftgqefsalmpsvangrfdvaaaaigttakrketvdfsdgylag
    flsvltseagitdaaglkgkrlgvvqgtlqeiyaeknfagtdlvkfpdnnsavsalnngt
    vdahfldfeaakdysarypalkiavnipsfdapagfvirkgndalrnaldkglkeamqdg
    twkklhekwfpgtpmpaaylpkqhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >5l9mA (A:)
    dnplglidpttisvgtmgdakpyafttadgnftgfdielflnvagrlgfkkeqvvftgqe
    fsalmpsvangrfdvaaaaigttakrketvdfsdgylagflsvltstdaaglkgkrlgvv
    qgtlqeiyaeknfagtdlvkfpdnnsavsalnngtvdahfldfeaakdysarypalkiav
    nipsfdapagfvirkgndalrnaldkglkeamqdgtwkklhekwfpgtpmpaaylpk