PDB entry 5l9h

View 5l9h on RCSB PDB site
Description: Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-340
Class: hydrolase
Keywords: parasitic PDE, African Trypanosomiasis, sleeping sickness, hydrolase
Deposited on 2016-06-10, released 2018-03-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-05-23, with a file datestamp of 2018-05-18.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: phosphodiesterase
    Species: Trypanosoma brucei [TaxId:5691]
    Gene: PDEB1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5l9ha_
  • Chain 'B':
    Compound: phosphodiesterase
    Species: Trypanosoma brucei [TaxId:5691]
    Gene: PDEB1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5l9hb_
  • Heterogens: ZN, MG, GOL, FMT, CVL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5l9hA (A:)
gshmaselnehratlfnknvpsravkrvtaitkvereavlvcelpsfdvtdvefdlfrar
estdkpldvaaaiayrlllgsglpqkfgcsdevllnfilqcrkkyrnvpyhnfyhvvdvc
qtihtflyrgnvyekltelecfvllitalvhdldhmglnnsfylktesplgilssasgnt
svlevhhcnlaveilsdpesdvfdglegaertlafrsmidcvlatdmakhgsaleaflas
aadqssdeaafhrmtmeiilkagdisnvtkpfdisrqwamavteefyrqgdmekergvev
lpmfdrsknmelakgqigfidfvaapffqkivdaclqgmqwtvdriksnraqwervletr

    Sequence, based on observed residues (ATOM records): (download) 
    >5l9hA (A:)
vtaitkvereavlvcelpsfdvtdvefdlfrarestdkpldvaaaiayrlllgsglpqkf
gcsdevllnfilqcrkkyrnvpyhnfyhvvdvcqtihtflyrgnvyekltelecfvllit
alvhdldhmglnnsfylktesplgilssasgntsvlevhhcnlaveilsdpesdvfdgle
gaertlafrsmidcvlatdmakhgsaleaflasaadqssdeaafhrmtmeiilkagdisn
vtkpfdisrqwamavteefyrqgdmekergvevlpmfdrsknmelakgqigfidfvaapf
fqkivdaclqgmqwtvdriksnraqwervletr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5l9hB (B:)
gshmaselnehratlfnknvpsravkrvtaitkvereavlvcelpsfdvtdvefdlfrar
estdkpldvaaaiayrlllgsglpqkfgcsdevllnfilqcrkkyrnvpyhnfyhvvdvc
qtihtflyrgnvyekltelecfvllitalvhdldhmglnnsfylktesplgilssasgnt
svlevhhcnlaveilsdpesdvfdglegaertlafrsmidcvlatdmakhgsaleaflas
aadqssdeaafhrmtmeiilkagdisnvtkpfdisrqwamavteefyrqgdmekergvev
lpmfdrsknmelakgqigfidfvaapffqkivdaclqgmqwtvdriksnraqwervletr

    Sequence, based on observed residues (ATOM records): (download) 
    >5l9hB (B:)
rvtaitkvereavlvcelpsfdvtdvefdlfrarestdkpldvaaaiayrlllgsglpqk
fgcsdevllnfilqcrkkyrnvpyhnfyhvvdvcqtihtflyrgnvyekltelecfvlli
talvhdldhmglnnsfylktesplgilssasgntsvlevhhcnlaveilsdpesdvfdgl
egaertlafrsmidcvlatdmakhgsaleaflasaadqssdeaafhrmtmeiilkagdis
nvtkpfdisrqwamavteefyrqgdmekergvevlpmfdrsknmelakgqigfidfvaap
ffqkivdaclqgmqwtvdriksnraqwervletr