PDB entry 5l8d

View 5l8d on RCSB PDB site
Description: X-ray structure of NikA from Escherichia coli in complex with Ru(bis(pyrzol-1-yl)acetate scorpionate)(CO)2Cl
Class: metal binding protein
Keywords: Nickel-binding protein, artificial enzymes, bio-inspired chemistry, metal binding protein
Deposited on 2016-06-07, released 2017-03-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-16, with a file datestamp of 2019-10-11.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nickel-binding periplasmic protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: nikA, b3476, JW3441
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5l8da_
  • Chain 'B':
    Compound: Nickel-binding periplasmic protein
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: nikA, b3476, JW3441
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5l8db_
  • Heterogens: ACT, SO4, GOL, FE, EDT, RU, CL, 6RP, CMO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5l8dA (A:)
aapdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedg
ktwtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqi
tlksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvr
nenywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayht
qlsqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpy
anlglkpsqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeii
qadmrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpshadfq
aqqgladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpel
gnipyapiateipfeqikpvkp

    Sequence, based on observed residues (ATOM records): (download) 
    >5l8dA (A:)
apdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedgk
twtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqit
lksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvrn
enywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayhtq
lsqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpya
nlglkpsqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeiiq
admrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpshadfqa
qqgladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpelg
nipyapiateipfeqikp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5l8dB (B:)
aapdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedg
ktwtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqi
tlksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvr
nenywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayht
qlsqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpy
anlglkpsqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeii
qadmrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpshadfq
aqqgladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpel
gnipyapiateipfeqikpvkp

    Sequence, based on observed residues (ATOM records): (download) 
    >5l8dB (B:)
pdeittawpvnvgplnphlytpnqmfaqsmvyeplvkyqadgsvipwlakswthsedgkt
wtftlrddvkfsngepfdaeaaaenfravldnrqrhawlelanqivdvkalsktelqitl
ksayypflqelalprpfrfiapsqfknhetmngikapigtgpwilqesklnqydvfvrne
nywgekpaikkitfnvipdpttravafetgdidllygnegllpldtfarfsqnpayhtql
sqpietvmlalntakaptnelavrealnyavnkkslidnalygtqqvadtlfapsvpyan
lglkpsqydpqkakallekagwtlpagkdirekngqplrielsfigtdalsksmaeiiqa
dmrqigadvsligeeessiyarqrdgrfgmifhrtwgapydphaflssmrvpshadfqaq
qgladkplidkeigevlathdetqrqalyrdiltrlhdeavylpisyismmvvskpelgn
ipyapiateipfeqikpv