PDB entry 5l2j

View 5l2j on RCSB PDB site
Description: Crystal Structure of human CD1b in complex with C36-GMM
Class: immune system
Keywords: CD1b, lipid, TB, MTb, GMM, tuberculosis, GEM T cell, TCR, T cell, IMMUNE SYSTEM
Deposited on 2016-08-02, released 2016-11-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-12-07, with a file datestamp of 2016-12-02.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein cd1b
    Species: Homo sapiens [TaxId:9606]
    Gene: CD1B
    Database cross-references and differences (RAF-indexed):
    • Uniprot P29016 (Start-276)
      • expression tag (277-281)
    Domains in SCOPe 2.07: d5l2ja1, d5l2ja2, d5l2ja3
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5l2jb_
  • Heterogens: 6UL, NAG, FUC, BMA, MAN, ACT, CL, 70E, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5l2jA (A:)
    hafqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgnfsdk
    evaeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrgalggl
    dflsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnagkadl
    qrqvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilpnanw
    twylratldvadgeaaglscrvkhsslegqdiilywrgsglndifeaqkiewhehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >5l2jA (A:)
    fqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgnfsdkev
    aeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrgalggldf
    lsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnagkadlqr
    qvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilpnanwtw
    ylratldvadgeaaglscrvkhsslegqdiilywrgsgln
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5l2jB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrd
    

    Sequence, based on observed residues (ATOM records): (download)
    >5l2jB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdr