PDB entry 5kve

View 5kve on RCSB PDB site
Description: Zika specific antibody, ZV-48, bound to ZIKA envelope DIII
Class: viral protein/immune system
Keywords: Zika virus, envelope protein, viral protein, single-chain variable fragment, structural genomics, Center for Structural Genomics of Infectious Diseases, CSGID, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2016-07-14, released 2016-08-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'E':
    Compound: Genome polyprotein
    Species: Zika virus [TaxId:64320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5kvee_
  • Chain 'L':
    Compound: ZV-48 Antibody scFv
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KVE (0-End)
    Domains in SCOPe 2.08: d5kvel_
  • Heterogens: NA, SO4, ACT, EDO, HOH

PDB Chain Sequences:

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >5kveE (E:)
    mrlkgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgr
    litanpvitestenskmmleldppfgdsyivigvgekkithhwhrsgsti
    

    Sequence, based on observed residues (ATOM records): (download)
    >5kveE (E:)
    vsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrlitan
    pvitestenskmmleldppfgdsyivigvgekkithhwhrs
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >5kveL (L:)
    mdivmsqspsslavsvgekitmsckssqsllysnneknylawyqqkpgqspklliywasa
    rdsgvpdrftgsgsgtdftltissvkaedlavfycqqyysypytfgggtkleikggggsg
    gggsggggsqvqlqqpgaellkpgasvklsckasgysfsnywmhwvkqrpgqgpewigmi
    hpnsgntkynekfknkatltvdksssmvymqlssltsedsavfycarlgndmdywgqgts
    vtvss
    

    Sequence, based on observed residues (ATOM records): (download)
    >5kveL (L:)
    mdivmsqspsslavsvgekitmsckssqsllysnneknylawyqqkpgqspklliywasa
    rdsgvpdrftgsgsgtdftltissvkaedlavfycqqyysypytfgggtkleikgqvqlq
    qpgaellkpgasvklsckasgysfsnywmhwvkqrpgqgpewigmihpnsgntkynekfk
    nkatltvdksssmvymqlssltsedsavfycarlgndmdywgqgtsvtvs