PDB entry 5ksa

View 5ksa on RCSB PDB site
Description: Bel602-DQ8.5-glia-gamma1 complex
Class: immune system
Keywords: Celiac Disease T cell receptor peptide MHC complex, IMMUNE SYSTEM
Deposited on 2016-07-08, released 2016-09-21
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-10-19, with a file datestamp of 2016-10-14.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class II histocompatibility antigen, DQ alpha 1 chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DQA1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01909 (Start-182)
      • conflict (46)
    Domains in SCOPe 2.07: d5ksaa1, d5ksaa2
  • Chain 'B':
    Compound: HLA class II histocompatibility antigen, DQ beta 1 chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DQB1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ksab1, d5ksab2
  • Chain 'C':
    Compound: Bel602 alpha TRAV20*01
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KSA
    Domains in SCOPe 2.07: d5ksac1, d5ksac2
  • Chain 'D':
    Compound: Bel602 beta TRBV9*01
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KSA (Start-242)
    Domains in SCOPe 2.07: d5ksad1, d5ksad2
  • Chain 'J':
    Compound: DQ8.5-glia-gamma1 peptide
    Species: Triticum aestivum [TaxId:4565]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KSA (0-10)
  • Heterogens: NAG, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ksaA (A:)
edivadhvasygvnlyqsygpsgqythefdgdeqfyvdlgrketvwslpvlrqfrfdpqf
altniavlkhnlnslikrsnstaatnevpevtvfskspvtlgqpniliclvdnifppvvn
itwlsnghsvtegvsetsflsksdhsffkisyltllpsaeesydckvehwgldkpllkhw
epetsgddddk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ksaA (A:)
divadhvasygvnlyqsygpsgqythefdgdeqfyvdlgrketvwslpvlrqfrfdpqfa
ltniavlkhnlnslikrsnstaatnevpevtvfskspvtlgqpniliclvdnifppvvni
twlsnghsvtegvsetsflsksdhsffkisyltllpsaeesydckvehwgldkpllkhwe
pe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ksaB (B:)
qpqqsfpeqegsggsiegrggsgasrdspedfvyqfkgmcyftngtervrlvtryiynre
eyarfdsdvgvyravtplgppaaeywnsqkevlertraeldtvcrhnyqlelrttlqrrv
eptvtispsrtealnhhnllvcsvtdfypaqikvrwfrndqeettgvvstplirngdwtf
qilvmlemtpqrgdvytchvehpslqnpiivewraqstggddddk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ksaB (B:)
dspedfvyqfkgmcyftngtervrlvtryiynreeyarfdsdvgvyravtplgppaaeyw
nsqkevlertraeldtvcrhnyqlelrttlqrrveptvtispsrtealnhhnllvcsvtd
fypaqikvrwfrndqeettgvvstplirngdwtfqilvmlemtpqrgdvytchvehpslq
npiivewraq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ksaC (C:)
medqvtqspealrlqegessslncsytvsglrglfwyrqdpgkgpeflftlysageekek
erlkatltkkesflhitapkpedsatylcavqfmdsnyqliwgagtkliikpdiqnpdpa
vyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnk
sdfacanafnnsiipedtffpspess

    Sequence, based on observed residues (ATOM records): (download) 
    >5ksaC (C:)
edqvtqspealrlqegessslncsytvsglrglfwyrqdpgkgpeflftlysageekeke
rlkatltkkesflhitapkpedsatylcavqfmdsnyqliwgagtkliikpdiqnpdpav
yqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnks
dfacanafnnsiipe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ksaD (D:)
mgvtqtpkhlitatgqrvtlrcsprsgdlsvywyqqsldqglqfliqyyngeerakgnil
erfsaqqfpdlhselnlsslelgdsalyfcassvagtpsyeqyfgpgtrltvtedlknvf
ppevavfepseaeishtqkatlvclatgffpdhvelswwvngkevhsgvctdpqplkeqp
alndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawg
rad

    Sequence, based on observed residues (ATOM records): (download) 
    >5ksaD (D:)
gvtqtpkhlitatgqrvtlrcsprsgdlsvywyqqsldqglqfliqyyngeerakgnile
rfsaqqfpdlhselnlsslelgdsalyfcassvagtpsyeqyfgpgtrltvtedlknvfp
pevavfepseaeishtqkatlvclatgffpdhvelswwvngkevhsgvctdpqplkeqpa
lndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgr
ad

  • Chain 'J':
    No sequence available.