PDB entry 5ks9

View 5ks9 on RCSB PDB site
Description: Bel502-DQ8-glia-alpha1 complex
Class: immune system
Keywords: Celiac Disease T cell receptor peptide MHC complex, IMMUNE SYSTEM
Deposited on 2016-07-08, released 2016-09-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2016-09-21, with a file datestamp of 2016-09-16.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class II histocompatibility antigen, DQ alpha 1 chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DQA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5ks9a1, d5ks9a2
  • Chain 'B':
    Compound: HLA class II histocompatibility antigen, DQ beta 1 chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DQB1
    Database cross-references and differences (RAF-indexed):
    • PDB 5KS9
    • Uniprot U3PYM0 (Start-221)
    Domains in SCOPe 2.06: d5ks9b1, d5ks9b2
  • Chain 'C':
    Compound: HLA class II histocompatibility antigen, DQ alpha 1 chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DQA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5ks9c1, d5ks9c2
  • Chain 'D':
    Compound: HLA class II histocompatibility antigen, DQ beta 1 chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DQB1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5ks9d1, d5ks9d2
  • Chain 'E':
    Compound: Bel502 TCR alpha TRAV20*01
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KS9
    Domains in SCOPe 2.06: d5ks9e1, d5ks9e2
  • Chain 'F':
    Compound: Bel502 TCR beta TRBV9*01
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KS9
    Domains in SCOPe 2.06: d5ks9f1, d5ks9f2
  • Chain 'G':
    Compound: Bel502 TCR alpha TRAV20*01
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KS9
    Domains in SCOPe 2.06: d5ks9g1, d5ks9g2
  • Chain 'H':
    Compound: Bel502 TCR beta TRBV9*01
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KS9
  • Chain 'I':
    Compound: DQ8-glia-alpha1 peptide
    Species: Triticum aestivum [TaxId:4565]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KS9 (0-15)
  • Chain 'J':
    Compound: DQ8-glia-alpha1 peptide
    Species: Triticum aestivum [TaxId:4565]
    Database cross-references and differences (RAF-indexed):
    • PDB 5KS9 (0-15)
  • Heterogens: NAG, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ks9A (A:)
edivadhvasygvnlyqsygpsgqyshefdgdeefyvdlerketvwqlplfrrfrrfdpq
faltniavlkhnlnivikrsnstaatnevpevtvfskspvtlgqpntliclvdnifppvv
nitwlsnghsvtegvsetsflsksdhsffkisyltflpsadeiydckvehwgldepllkh
wepetsgddddk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ks9A (A:)
divadhvasygvnlyqsygpsgqyshefdgdeefyvdlerketvwqlplfrrfrrfdpqf
altniavlkhnlnivikrsnstaatnevpevtvfskspvtlgqpntliclvdnifppvvn
itwlsnghsvtegvsetsflsksdhsffkisyltflpsadeiydckvehwgldepllkhw
ep

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ks9B (B:)
psgegsfqpsqenpqgsggsiegrggsgasrdspedfvyqfkgmcyftngtervrlvtry
iynreeyarfdsdvgvyravtplgppaaeywnsqkevlertraeldtvcrhnyqlelrtt
lqrrveptvtispsrtealnhhnllvcsvtdfypaqikvrwfrndqeettgvvstplirn
gdwtfqilvmlemtpqrgdvytchvehpslqnpiivewraqstggddddk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ks9B (B:)
dspedfvyqfkgmcyftngtervrlvtryiynreeyarfdsdvgvyravtplgppaaeyw
nsqkevlertraeldtvcrhnyqlelrttlqrrveptvtispllvcsvtdfypaqikvrw
frndqeettgvvstplirngdwtfqilvmlemtpqrgdvytchvehpslqnpiivewraq
s

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ks9C (C:)
edivadhvasygvnlyqsygpsgqyshefdgdeefyvdlerketvwqlplfrrfrrfdpq
faltniavlkhnlnivikrsnstaatnevpevtvfskspvtlgqpntliclvdnifppvv
nitwlsnghsvtegvsetsflsksdhsffkisyltflpsadeiydckvehwgldepllkh
wepetsgddddk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ks9C (C:)
divadhvasygvnlyqsygpsgqyshefdgdeefyvdlerketvwqlplfrrfrrfdpqf
altniavlkhnlnivikrsnstaatnevpevtvfskspvtlgqpntliclvdnifppvvn
itwlsnghsvtegvsetsflsksdhsffkisyltflpsadeiydckvehwgldepllkhw
ep

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ks9D (D:)
psgegsfqpsqenpqgsggsiegrggsgasrdspedfvyqfkgmcyftngtervrlvtry
iynreeyarfdsdvgvyravtplgppaaeywnsqkevlertraeldtvcrhnyqlelrtt
lqrrveptvtispsrtealnhhnllvcsvtdfypaqikvrwfrndqeettgvvstplirn
gdwtfqilvmlemtpqrgdvytchvehpslqnpiivewraqstggddddk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ks9D (D:)
dspedfvyqfkgmcyftngtervrlvtryiynreeyarfdsdvgvyravtplgppaaeyw
nsqkevlertraeldtvcrhnyqlelrttlqrrveptvtispllvcsvtdfypaqikvrw
frndqeettgvvstplirngdwtfqilvmlemdvytchvehpslqnpiivewr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5ks9E (E:)
medqvtqspealrlqegessslncsytvsglrglfwyrqdpgkgpeflftlysageekek
erlkatltkkesflhitapkpedsatylcavalnnnagnmltfgggtrlmvkphiqnpdp
avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsn
ksdfacanafnnsiipedtffpspess

    Sequence, based on observed residues (ATOM records): (download) 
    >5ks9E (E:)
qvtqspealrlqegessslncsytvsglrglfwyrqdpgkgpeflftlysageekekerl
katltkkesflhitapkpedsatylcavalnnnagnmltfgggtrlmvkphiqnpdpavy
qlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksd
facanafnnsiip

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5ks9F (F:)
mgvtqtpkhlitatgqrvtlrcsprsgdlsvywyqqsldqglqfliqyyngeerakgnil
erfsaqqfpdlhselnlsslelgdsalyfcassvapgsdtqyfgpgtrltvledlknvfp
pevavfepseaeishtqkatlvclatgffpdhvelswwvngkevhsgvctdpqplkeqpa
lndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgr
ad

    Sequence, based on observed residues (ATOM records): (download) 
    >5ks9F (F:)
gvtqtpkhlitatgqrvtlrcsprsgdlsvywyqqsldqglqfliqyyngeerakgnile
rfsaqqfpdlhselnlsslelgdsalyfcassvapgsdtqyfgpgtrltvledlknvfpp
evavfepseaeishtqkatlvclatgffpdhvelswwvngkevhsgvctdpqplkeqpal
ndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgra

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5ks9G (G:)
medqvtqspealrlqegessslncsytvsglrglfwyrqdpgkgpeflftlysageekek
erlkatltkkesflhitapkpedsatylcavalnnnagnmltfgggtrlmvkphiqnpdp
avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsn
ksdfacanafnnsiipedtffpspess

    Sequence, based on observed residues (ATOM records): (download) 
    >5ks9G (G:)
qvtqspealrlqegessslncsytvsglrglfwyrqdpgkgpeflftlysageekekerl
katltkkesflhitapkpedsatylcavalnnnagnmltfgggtrlmvkphiqnpdpavy
qlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksd
facanafnnsii

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.