PDB entry 5kq1
View 5kq1 on RCSB PDB site
Description: Crystal structure of S. pombe Dcp1/Dcp2 in complex with H. sapiens PNRC2
Class: hydrolase
Keywords: decapping mRNA decay Nudix cap analog, HYDROLASE
Deposited on
2016-07-05, released
2016-10-05
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-12-25, with a file datestamp of
2019-12-20.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.14
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: mRNA-decapping enzyme subunit 1
Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
Gene: dcp1, SPBC3B9.21
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: mRNA decapping complex subunit 2
Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
Gene: dcp2, SPAC19A8.12
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5kq1b1, d5kq1b2, d5kq1b3 - Chain 'C':
Compound: proline-rich nuclear receptor coactivator 2
Species: Homo sapiens [TaxId:9606]
Gene: PNRC2, HSPC208
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: mRNA-decapping enzyme subunit 1
Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
Gene: dcp1, SPBC3B9.21
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: mRNA decapping complex subunit 2
Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
Gene: dcp2, SPAC19A8.12
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5kq1e1, d5kq1e2, d5kq1e3 - Chain 'F':
Compound: proline-rich nuclear receptor coactivator 2
Species: Homo sapiens [TaxId:9606]
Gene: PNRC2, HSPC208
Database cross-references and differences (RAF-indexed):
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5kq1B (B:)
ggggsmsftnatfsqvlddlsarfilnlpaeeqssverlcfqieqahwfyedfiraqndq
lpslglrvfsaklfahcpllwkwskvheeafddflryktripvrgaimldmsmqqcvlvk
gwkassgwgfpkgkidkdesdvdcairevyeetgfdcssrinpnefidmtirgqnvrlyi
ipgisldtrfesrtrkeiskiewhnlmdlptfkknkpqtmknkfymvipflaplkkwikk
rniannttk
Sequence, based on observed residues (ATOM records): (download)
>5kq1B (B:)
smsftnatfsqvlddlsarfilnlpaeeqssverlcfqieqahwfyedfiraqndqlpsl
glrvfsaklfahcpllwkwskvheeafddflryktripvrgaimldmsmqqcvlvkgwka
ssgwgfpkgkidkdesdvdcairevyeetgfdcssrinpnefidmtirgqnvrlyiipgi
sldtrfesreiskiewhnlmdlptfkknkpmknkfymvipflaplkkwikkrnian
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>5kq1E (E:)
ggggsmsftnatfsqvlddlsarfilnlpaeeqssverlcfqieqahwfyedfiraqndq
lpslglrvfsaklfahcpllwkwskvheeafddflryktripvrgaimldmsmqqcvlvk
gwkassgwgfpkgkidkdesdvdcairevyeetgfdcssrinpnefidmtirgqnvrlyi
ipgisldtrfesrtrkeiskiewhnlmdlptfkknkpqtmknkfymvipflaplkkwikk
rniannttk
Sequence, based on observed residues (ATOM records): (download)
>5kq1E (E:)
smsftnatfsqvlddlsarfilnlpaeeqssverlcfqieqahwfyedfiraqndqlpsl
glrvfsaklfahcpllwkwskvhafddflryktripvrgaimldmsmqqcvlvkgwkass
gwgfpkgkidkdesdvdcairevyeetgfdcssrinpnefidmtirgqnvrlyiipgisl
dtrfesrteiskiewhnlmdlptfkknkmknkfymvipflaplkkwikkrniann
- Chain 'F':
No sequence available.