PDB entry 5kon

View 5kon on RCSB PDB site
Description: Protruding domain of GII.4 human norovirus isolate 08-14
Class: viral protein
Keywords: Viral capsid protein, Protruding domain, viral protein, Norovirus
Deposited on 2016-07-01, released 2017-05-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-05-24, with a file datestamp of 2017-05-19.
Experiment type: XRAY
Resolution: 1.51 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Norovirus GII.4 [TaxId:489821]
    Gene: KU985154
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5kona1, d5kona2
  • Chain 'B':
    Compound: vp1
    Species: Norovirus GII.4 [TaxId:489821]
    Gene: KU985154
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5konb1, d5konb2
  • Heterogens: EDO, MES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5konA (A:)
gpgskpfsvpvltveemtnsrfpipleklftgpssafvvqpqngrcttdgvllgttqlsp
vnictfrgdvthitgsrnytmnlasqnwnnydpteeipaplgapdfvgkiqgmltqttra
dgstrghkatvytgsadfapklgrvqfetdtdhdfeanqntkftpvgviqdgstthrnep
qqwvlpsysgrnthnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqy
fyqeaapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdsw
vnqfytlapm

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5konB (B:)
gpgskpfsvpvltveemtnsrfpipleklftgpssafvvqpqngrcttdgvllgttqlsp
vnictfrgdvthitgsrnytmnlasqnwnnydpteeipaplgapdfvgkiqgmltqttra
dgstrghkatvytgsadfapklgrvqfetdtdhdfeanqntkftpvgviqdgstthrnep
qqwvlpsysgrnthnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqy
fyqeaapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdsw
vnqfytlapm