PDB entry 5koj

View 5koj on RCSB PDB site
Description: Nitrogenase MoFeP protein in the IDS oxidized state
Class: oxidoreductase
Keywords: Nitrogenase, electron transfer, oxidoreductase, P-cluster
Deposited on 2016-06-30, released 2016-09-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 2.59 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nitrogenase protein alpha chain
    Species: Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) [TaxId:272568]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5koja_
  • Chain 'B':
    Compound: Nitrogenase FeMo beta subunit protein NifK
    Species: Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) [TaxId:272568]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kojb_
  • Chain 'C':
    Compound: Nitrogenase protein alpha chain
    Species: Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) [TaxId:272568]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kojc_
  • Chain 'D':
    Compound: Nitrogenase FeMo beta subunit protein NifK
    Species: Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) [TaxId:272568]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kojd_
  • Heterogens: HCA, ICS, CLF, FE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5kojA (A:)
msldedktndsafharliaevleaypdkarkrrqkhlnvagqaeaeaqdageegvmlsec
dvksnvksvpgvmtirgcayagskgvvwgpvkdmvhishgpvgcgqyswsqrrnyyignt
gvdsfvtmqftsdfqekdivfggdkklekiideidelfplakgisvqsecpigligddie
avsrkkkkeigktivpvrcegfrgvsqslghhiandairdwvfdgedkhaafettpydvn
vigdyniggdawssrilleemglrvvgnwsgdatlaeierapkaklnlihcyrsmnyicr
hmeekynipwteynffgpsqiaaslrkiaalfdekiqegaerviakyqplvdaviekfrp
rlagkkvmlyvgglrprhvvnayndlgmeivgtgyefghnddyqrtghyvregtliyddv
tgyelekfiegirpdlvgsgikekypvqkmgipfrqmhswdysgpyhgydgfaifardmd
lainnpvwsmfkapwknaa

    Sequence, based on observed residues (ATOM records): (download) 
    >5kojA (A:)
dktndsafharliaevleaypdkarkrrqkhlnvagqaegvmlsecdvksnvksvpgvmt
irgcayagskgvvwgpvkdmvhishgpvgcgqyswsqrrnyyigntgvdsfvtmqftsdf
qekdivfggdkklekiideidelfplakgisvqsecpigligddieavsrkkkkeigkti
vpvrcegfrgvsqslghhiandairdwvfdgedkhaafettpydvnvigdyniggdawss
rilleemglrvvgnwsgdatlaeierapkaklnlihcyrsmnyicrhmeekynipwteyn
ffgpsqiaaslrkiaalfdekiqegaerviakyqplvdaviekfrprlagkkvmlyvggl
rprhvvnayndlgmeivgtgyefghnddyqrtghyvregtliyddvtgyelekfiegirp
dlvgsgikekypvqkmgipfrqmhswdysgpyhgydgfaifardmdlainnpvwsmfkap
w

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5kojB (B:)
mpqnvdkildhaplfrepeyqemlagkaklenmppadkvveiadwtksweyreknfares
lsvnpakacqplgavfvasgfertmsfvhgsqgcvayyrshlsrhfkepssavsssmted
aavfgglnnmvdglantyklydpkmiavsttcmaevigddlhafiqtakgkgsvpeefdv
pfahtpafvgshvtgydnmlkgilehfwkgrtpvpnrsvniipgfdgfavgnnrelkril
gmmgvqytilsdvsdqfdtpsdgeyrmydggtkieaardavnadytislqeyctpktley
cqsfgqktasfhyplgigatddllqklseisgkpvpqelemergrlvdaladsqaylhgk
tyaiygdpdfvygmarfiletggepkhclatngskaweaqmqelfdsspfgvgckawggk
dlwhmrsllatekvdllignsygkylerdtdtplirlmfpifdrhhhhrfpvwgyqgalr
vlvtlldkifdkldddtiqagvtdysfdltr

    Sequence, based on observed residues (ATOM records): (download) 
    >5kojB (B:)
pqnvdkildhaplfrepeyqemlagkaklenmppadkvveiadwtksweyreknfaresl
svnpakacqplgavfvasgfertmsfvhgsqgcvayyrshlsrhfkepssavsssmteda
avfgglnnmvdglantyklydpkmiavsttcmaevigddlhafiqtakgkgsvpeefdvp
fahtpafvgshvtgydnmlkgilehfwkgrtpvpnrsvniipgfdgfavgnnrelkrilg
mmgvqytilsdvsdqfdtpsdgeyrmydggtkieaardavnadytislqeyctpktleyc
qsfgqktasfhyplgigatddllqklseisgkpvpqelemergrlvdaladsqaylhgkt
yaiygdpdfvygmarfiletggepkhclatngskaweaqmqelfdsspfgvgckawggkd
lwhmrsllatekvdllignsygkylerdtdtplirlmfpifdrhhhhrfpvwgyqgalrv
lvtlldkifdkldddtiqagvtdysfdltr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5kojC (C:)
msldedktndsafharliaevleaypdkarkrrqkhlnvagqaeaeaqdageegvmlsec
dvksnvksvpgvmtirgcayagskgvvwgpvkdmvhishgpvgcgqyswsqrrnyyignt
gvdsfvtmqftsdfqekdivfggdkklekiideidelfplakgisvqsecpigligddie
avsrkkkkeigktivpvrcegfrgvsqslghhiandairdwvfdgedkhaafettpydvn
vigdyniggdawssrilleemglrvvgnwsgdatlaeierapkaklnlihcyrsmnyicr
hmeekynipwteynffgpsqiaaslrkiaalfdekiqegaerviakyqplvdaviekfrp
rlagkkvmlyvgglrprhvvnayndlgmeivgtgyefghnddyqrtghyvregtliyddv
tgyelekfiegirpdlvgsgikekypvqkmgipfrqmhswdysgpyhgydgfaifardmd
lainnpvwsmfkapwknaa

    Sequence, based on observed residues (ATOM records): (download) 
    >5kojC (C:)
dktndsafharliaevleaypdkarkrrqkhlnvagqagvmlsecdvksnvksvpgvmti
rgcayagskgvvwgpvkdmvhishgpvgcgqyswsqrrnyyigntgvdsfvtmqftsdfq
ekdivfggdkklekiideidelfplakgisvqsecpigligddieavsrkkkkeigktiv
pvrcegfrgvsqslghhiandairdwvfdgedkhaafettpydvnvigdyniggdawssr
illeemglrvvgnwsgdatlaeierapkaklnlihcyrsmnyicrhmeekynipwteynf
fgpsqiaaslrkiaalfdekiqegaerviakyqplvdaviekfrprlagkkvmlyvgglr
prhvvnayndlgmeivgtgyefghnddyqrtghyvregtliyddvtgyelekfiegirpd
lvgsgikekypvqkmgipfrqmhswdysgpyhgydgfaifardmdlainnpvwsmfkapw

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5kojD (D:)
mpqnvdkildhaplfrepeyqemlagkaklenmppadkvveiadwtksweyreknfares
lsvnpakacqplgavfvasgfertmsfvhgsqgcvayyrshlsrhfkepssavsssmted
aavfgglnnmvdglantyklydpkmiavsttcmaevigddlhafiqtakgkgsvpeefdv
pfahtpafvgshvtgydnmlkgilehfwkgrtpvpnrsvniipgfdgfavgnnrelkril
gmmgvqytilsdvsdqfdtpsdgeyrmydggtkieaardavnadytislqeyctpktley
cqsfgqktasfhyplgigatddllqklseisgkpvpqelemergrlvdaladsqaylhgk
tyaiygdpdfvygmarfiletggepkhclatngskaweaqmqelfdsspfgvgckawggk
dlwhmrsllatekvdllignsygkylerdtdtplirlmfpifdrhhhhrfpvwgyqgalr
vlvtlldkifdkldddtiqagvtdysfdltr

    Sequence, based on observed residues (ATOM records): (download) 
    >5kojD (D:)
pqnvdkildhaplfrepeyqemlagkaklenmppadkvveiadwtksweyreknfaresl
svnpakacqplgavfvasgfertmsfvhgsqgcvayyrshlsrhfkepssavsssmteda
avfgglnnmvdglantyklydpkmiavsttcmaevigddlhafiqtakgkgsvpeefdvp
fahtpafvgshvtgydnmlkgilehfwkgrtpvpnrsvniipgfdgfavgnnrelkrilg
mmgvqytilsdvsdqfdtpsdgeyrmydggtkieaardavnadytislqeyctpktleyc
qsfgqktasfhyplgigatddllqklseisgkpvpqelemergrlvdaladsqaylhgkt
yaiygdpdfvygmarfiletggepkhclatngskaweaqmqelfdsspfgvgckawggkd
lwhmrsllatekvdllignsygkylerdtdtplirlmfpifdrhhhhrfpvwgyqgalrv
lvtlldkifdkldddtiqagvtdysfdltr