PDB entry 5koh

View 5koh on RCSB PDB site
Description: Nitrogenase MoFeP from Gluconacetobacter diazotrophicus in dithionite reduced state
Class: oxidoreductase
Keywords: Nitrogenase, electron transfer, oxidoreductase, P-cluster
Deposited on 2016-06-30, released 2016-09-21
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-20, with a file datestamp of 2017-09-15.
Experiment type: XRAY
Resolution: 1.83 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nitrogenase protein alpha chain
    Species: Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) [TaxId:272568]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5koha_
  • Chain 'B':
    Compound: Nitrogenase FeMo beta subunit protein NifK
    Species: Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) [TaxId:272568]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kohb_
  • Chain 'C':
    Compound: Nitrogenase protein alpha chain
    Species: Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) [TaxId:272568]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kohc_
  • Chain 'D':
    Compound: Nitrogenase FeMo beta subunit protein NifK
    Species: Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) [TaxId:272568]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kohd_
  • Heterogens: HCA, ICS, MRD, CLF, FE, MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5kohA (A:)
msldedktndsafharliaevleaypdkarkrrqkhlnvagqaeaeaqdageegvmlsec
dvksnvksvpgvmtirgcayagskgvvwgpvkdmvhishgpvgcgqyswsqrrnyyignt
gvdsfvtmqftsdfqekdivfggdkklekiideidelfplakgisvqsecpigligddie
avsrkkkkeigktivpvrcegfrgvsqslghhiandairdwvfdgedkhaafettpydvn
vigdyniggdawssrilleemglrvvgnwsgdatlaeierapkaklnlihcyrsmnyicr
hmeekynipwteynffgpsqiaaslrkiaalfdekiqegaerviakyqplvdaviekfrp
rlagkkvmlyvgglrprhvvnayndlgmeivgtgyefghnddyqrtghyvregtliyddv
tgyelekfiegirpdlvgsgikekypvqkmgipfrqmhswdysgpyhgydgfaifardmd
lainnpvwsmfkapwknaa

    Sequence, based on observed residues (ATOM records): (download) 
    >5kohA (A:)
dktndsafharliaevleaypdkarkrrqkhlnvagqaeagvmlsecdvksnvksvpgvm
tirgcayagskgvvwgpvkdmvhishgpvgcgqyswsqrrnyyigntgvdsfvtmqftsd
fqekdivfggdkklekiideidelfplakgisvqsecpigligddieavsrkkkkeigkt
ivpvrcegfrgvsqslghhiandairdwvfdgedkhaafettpydvnvigdyniggdaws
srilleemglrvvgnwsgdatlaeierapkaklnlihcyrsmnyicrhmeekynipwtey
nffgpsqiaaslrkiaalfdekiqegaerviakyqplvdaviekfrprlagkkvmlyvgg
lrprhvvnayndlgmeivgtgyefghnddyqrtghyvregtliyddvtgyelekfiegir
pdlvgsgikekypvqkmgipfrqmhswdysgpyhgydgfaifardmdlainnpvwsmfka
pwk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5kohB (B:)
mpqnvdkildhaplfrepeyqemlagkaklenmppadkvveiadwtksweyreknfares
lsvnpakacqplgavfvasgfertmsfvhgsqgcvayyrshlsrhfkepssavsssmted
aavfgglnnmvdglantyklydpkmiavsttcmaevigddlhafiqtakgkgsvpeefdv
pfahtpafvgshvtgydnmlkgilehfwkgrtpvpnrsvniipgfdgfavgnnrelkril
gmmgvqytilsdvsdqfdtpsdgeyrmydggtkieaardavnadytislqeyctpktley
cqsfgqktasfhyplgigatddllqklseisgkpvpqelemergrlvdaladsqaylhgk
tyaiygdpdfvygmarfiletggepkhclatngskaweaqmqelfdsspfgvgckawggk
dlwhmrsllatekvdllignsygkylerdtdtplirlmfpifdrhhhhrfpvwgyqgalr
vlvtlldkifdkldddtiqagvtdysfdltr

    Sequence, based on observed residues (ATOM records): (download) 
    >5kohB (B:)
pqnvdkildhaplfrepeyqemlagkaklenmppadkvveiadwtksweyreknfaresl
svnpakacqplgavfvasgfertmsfvhgsqgcvayyrshlsrhfkepssavsssmteda
avfgglnnmvdglantyklydpkmiavsttcmaevigddlhafiqtakgkgsvpeefdvp
fahtpafvgshvtgydnmlkgilehfwkgrtpvpnrsvniipgfdgfavgnnrelkrilg
mmgvqytilsdvsdqfdtpsdgeyrmydggtkieaardavnadytislqeyctpktleyc
qsfgqktasfhyplgigatddllqklseisgkpvpqelemergrlvdaladsqaylhgkt
yaiygdpdfvygmarfiletggepkhclatngskaweaqmqelfdsspfgvgckawggkd
lwhmrsllatekvdllignsygkylerdtdtplirlmfpifdrhhhhrfpvwgyqgalrv
lvtlldkifdkldddtiqagvtdysfdltr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5kohC (C:)
msldedktndsafharliaevleaypdkarkrrqkhlnvagqaeaeaqdageegvmlsec
dvksnvksvpgvmtirgcayagskgvvwgpvkdmvhishgpvgcgqyswsqrrnyyignt
gvdsfvtmqftsdfqekdivfggdkklekiideidelfplakgisvqsecpigligddie
avsrkkkkeigktivpvrcegfrgvsqslghhiandairdwvfdgedkhaafettpydvn
vigdyniggdawssrilleemglrvvgnwsgdatlaeierapkaklnlihcyrsmnyicr
hmeekynipwteynffgpsqiaaslrkiaalfdekiqegaerviakyqplvdaviekfrp
rlagkkvmlyvgglrprhvvnayndlgmeivgtgyefghnddyqrtghyvregtliyddv
tgyelekfiegirpdlvgsgikekypvqkmgipfrqmhswdysgpyhgydgfaifardmd
lainnpvwsmfkapwknaa

    Sequence, based on observed residues (ATOM records): (download) 
    >5kohC (C:)
dktndsafharliaevleaypdkarkrrqkhlnvagqaegvmlsecdvksnvksvpgvmt
irgcayagskgvvwgpvkdmvhishgpvgcgqyswsqrrnyyigntgvdsfvtmqftsdf
qekdivfggdkklekiideidelfplakgisvqsecpigligddieavsrkkkkeigkti
vpvrcegfrgvsqslghhiandairdwvfdgedkhaafettpydvnvigdyniggdawss
rilleemglrvvgnwsgdatlaeierapkaklnlihcyrsmnyicrhmeekynipwteyn
ffgpsqiaaslrkiaalfdekiqegaerviakyqplvdaviekfrprlagkkvmlyvggl
rprhvvnayndlgmeivgtgyefghnddyqrtghyvregtliyddvtgyelekfiegirp
dlvgsgikekypvqkmgipfrqmhswdysgpyhgydgfaifardmdlainnpvwsmfkap
wk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5kohD (D:)
mpqnvdkildhaplfrepeyqemlagkaklenmppadkvveiadwtksweyreknfares
lsvnpakacqplgavfvasgfertmsfvhgsqgcvayyrshlsrhfkepssavsssmted
aavfgglnnmvdglantyklydpkmiavsttcmaevigddlhafiqtakgkgsvpeefdv
pfahtpafvgshvtgydnmlkgilehfwkgrtpvpnrsvniipgfdgfavgnnrelkril
gmmgvqytilsdvsdqfdtpsdgeyrmydggtkieaardavnadytislqeyctpktley
cqsfgqktasfhyplgigatddllqklseisgkpvpqelemergrlvdaladsqaylhgk
tyaiygdpdfvygmarfiletggepkhclatngskaweaqmqelfdsspfgvgckawggk
dlwhmrsllatekvdllignsygkylerdtdtplirlmfpifdrhhhhrfpvwgyqgalr
vlvtlldkifdkldddtiqagvtdysfdltr

    Sequence, based on observed residues (ATOM records): (download) 
    >5kohD (D:)
pqnvdkildhaplfrepeyqemlagkaklenmppadkvveiadwtksweyreknfaresl
svnpakacqplgavfvasgfertmsfvhgsqgcvayyrshlsrhfkepssavsssmteda
avfgglnnmvdglantyklydpkmiavsttcmaevigddlhafiqtakgkgsvpeefdvp
fahtpafvgshvtgydnmlkgilehfwkgrtpvpnrsvniipgfdgfavgnnrelkrilg
mmgvqytilsdvsdqfdtpsdgeyrmydggtkieaardavnadytislqeyctpktleyc
qsfgqktasfhyplgigatddllqklseisgkpvpqelemergrlvdaladsqaylhgkt
yaiygdpdfvygmarfiletggepkhclatngskaweaqmqelfdsspfgvgckawggkd
lwhmrsllatekvdllignsygkylerdtdtplirlmfpifdrhhhhrfpvwgyqgalrv
lvtlldkifdkldddtiqagvtdysfdltr