PDB entry 5knd

View 5knd on RCSB PDB site
Description: Crystal structure of the Pi-bound V1 complex
Class: hydrolase
Keywords: P-loop, Hydrolase, Na(+)-ATPase, ATP Binding
Deposited on 2016-06-28, released 2016-11-02
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-11-16, with a file datestamp of 2016-11-11.
Experiment type: XRAY
Resolution: 2.89 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08636 (7-End)
      • expression tag (1-6)
  • Chain 'C':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: V-type sodium ATPase subunit B
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kndd1, d5kndd2, d5kndd3
  • Chain 'E':
    Compound: V-type sodium ATPase subunit B
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5knde1, d5knde2, d5knde3
  • Chain 'F':
    Compound: V-type sodium ATPase subunit B
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kndf1, d5kndf2, d5kndf3
  • Chain 'G':
    Compound: V-type sodium ATPase subunit D
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5kndg_
  • Chain 'H':
    Compound: V-type sodium ATPase subunit NtpG (F)
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpG
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, GOL, PO4, B3P, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5kndD (D:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >5kndD (D:)
eyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegtsgi
nlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpiardy
pdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavvfaa
igitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekgmhv
lvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtqipi
ltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagktre
dhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytnrti
tetldlgwellamlprtelkrikddlldkylp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5kndE (E:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >5kndE (E:)
eyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegtsgi
nlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpiardy
pdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavvfaa
igitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekgmhv
lvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtqipi
ltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagktre
dhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytnrti
tetldlgwellamlprtelkrikddlldkylp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5kndF (F:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >5kndF (F:)
mikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegt
sginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpia
rdypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavv
faaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekg
mhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtq
ipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagk
tredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytn
rtitetldlgwellamlprtelkrikddlldkylp

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5kndG (G:)
gssgssgmrlnvnptrmeltrlkkqlttatrghkllkdkqdelmrqfillirknnelrqa
ieketqtamkdfvlakstveeafidellalpaenvsisvveknimsvkvplmnfqydetl
netpleygylhsnaeldrsidgftqllpkllklaevektcqlmaeeiektrrrvnaleym
tipqleetiyyikmkleeneraevtrlikvknmgtee

    Sequence, based on observed residues (ATOM records): (download) 
    >5kndG (G:)
nptrmeltrlkkqlttatrghkllkdkqdelmrqfillirknnelrqaieketqtamkdf
vlakstveeafideenvsisvveknimsvkvplmnfqnaeldrsidgftqllpkllklae
vektcqlmaeeiektrrrvnaleymtipqleetiyyikmkleeneraevtrlikvknm

  • Chain 'H':
    No sequence available.