PDB entry 5knc

View 5knc on RCSB PDB site
Description: Crystal structure of the 3 ADP-bound V1 complex
Class: hydrolase
Keywords: P-loop, Hydrolase, Na(+)-ATPase, ATP Binding
Deposited on 2016-06-28, released 2016-11-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: XRAY
Resolution: 3.02 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08636 (7-End)
      • expression tag (6)
  • Chain 'C':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: V-type sodium ATPase subunit B
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5kncd1, d5kncd2, d5kncd3
  • Chain 'E':
    Compound: V-type sodium ATPase subunit B
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5knce1, d5knce2, d5knce3
  • Chain 'F':
    Compound: V-type sodium ATPase subunit B
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5kncf1, d5kncf2, d5kncf3
  • Chain 'G':
    Compound: V-type sodium ATPase subunit D
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5kncg_
  • Chain 'H':
    Compound: V-type sodium ATPase subunit NtpG (F)
    Species: Enterococcus hirae ATCC 9790 [TaxId:768486]
    Gene: ntpG
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, SO4, ADP, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5kncD (D:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >5kncD (D:)
mikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegt
sginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpia
rdypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavv
faaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekg
mhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtq
ipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagk
tredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytn
rtitetldlgwellamlprtelkrikddlldkyl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5kncE (E:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >5kncE (E:)
keyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegtsg
inlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpiard
ypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavvfa
aigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekgmh
vlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtqip
iltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagktr
edhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytnrt
itetldlgwellamlprtelkrikddlldkylp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5kncF (F:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >5kncF (F:)
mikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegt
sginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpia
rdypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavv
faaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekg
mhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtq
ipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagk
tredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytn
rtitetldlgwellamlprtelkrikddlldkylp

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5kncG (G:)
gssgssgmrlnvnptrmeltrlkkqlttatrghkllkdkqdelmrqfillirknnelrqa
ieketqtamkdfvlakstveeafidellalpaenvsisvveknimsvkvplmnfqydetl
netpleygylhsnaeldrsidgftqllpkllklaevektcqlmaeeiektrrrvnaleym
tipqleetiyyikmkleeneraevtrlikvknmgtee

    Sequence, based on observed residues (ATOM records): (download) 
    >5kncG (G:)
rlnvnptrmeltrlkkqlttatrghkllkdkqdelmrqfillirknnelrqaieketqta
mkdfvlakstveeafidellalpaenvsisvveknimsvkvplmnfqydgylhsnaeldr
sidgftqllpkllklaevektcqlmaeeiektrrrvnaleymtipqleetiyyikmklee
neraevtrlikvknm

  • Chain 'H':
    No sequence available.