PDB entry 5k8a

View 5k8a on RCSB PDB site
Description: nist fab
Class: immune system
Keywords: measurement standard, pseudo-tetragonal packing, IMMUNE SYSTEM
Deposited on 2016-05-27, released 2017-08-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-01-23, with a file datestamp of 2019-01-18.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: humanized Fab Lite chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5K8A (0-212)
    Domains in SCOPe 2.08: d5k8aa1, d5k8aa2
  • Chain 'B':
    Compound: heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5K8A (0-End)
    Domains in SCOPe 2.08: d5k8ab_
  • Chain 'E':
    Compound: humanized Fab Lite chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5K8A (0-212)
    Domains in SCOPe 2.08: d5k8ae1, d5k8ae2
  • Chain 'F':
    Compound: heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5K8A (0-End)
    Domains in SCOPe 2.08: d5k8af_
  • Chain 'H':
    Compound: heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5K8A (0-End)
    Domains in SCOPe 2.08: d5k8ah_
  • Chain 'L':
    Compound: humanized Fab Lite chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5K8A (0-212)
    Domains in SCOPe 2.08: d5k8al1, d5k8al2
  • Chain 'M':
    Compound: humanized Fab Lite chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5K8A (0-212)
    Domains in SCOPe 2.08: d5k8am1, d5k8am2
  • Chain 'V':
    Compound: heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5K8A (0-End)
    Domains in SCOPe 2.08: d5k8av_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5k8aA (A:)
diqmtqspstlsasvgdrvtitcsassrvgymhwyqqkpgkapklliydtsklasgvpsr
fsgsgsgteftltisslqpddfatyycfqgsgypftfgggtkveikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5k8aB (B:)
evtlresgpalvkptqtltltctfsgfslstagmsvgwirqppgkalewladiwwddkkh
ynpslkdrltiskdtsknqvvlkvtnmdpadtatyycardmifnfyfdvwgqgttvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdkth

    Sequence, based on observed residues (ATOM records): (download) 
    >5k8aB (B:)
evtlresgpalvkptqtltltctfsgfslstagmsvgwirqppgkalewladiwwddkkh
ynpslkdrltiskdtsknqvvlkvtnmdpadtatyycardmifnfyfdvwgqgttvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5k8aE (E:)
diqmtqspstlsasvgdrvtitcsassrvgymhwyqqkpgkapklliydtsklasgvpsr
fsgsgsgteftltisslqpddfatyycfqgsgypftfgggtkveikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5k8aF (F:)
evtlresgpalvkptqtltltctfsgfslstagmsvgwirqppgkalewladiwwddkkh
ynpslkdrltiskdtsknqvvlkvtnmdpadtatyycardmifnfyfdvwgqgttvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdkth

    Sequence, based on observed residues (ATOM records): (download) 
    >5k8aF (F:)
evtlresgpalvkptqtltltctfsgfslstagmsvgwirqppgkalewladiwwddkkh
ynpslkdrltiskdtsknqvvlkvtnmdpadtatyycardmifnfyfdvwgqgttvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5k8aH (H:)
evtlresgpalvkptqtltltctfsgfslstagmsvgwirqppgkalewladiwwddkkh
ynpslkdrltiskdtsknqvvlkvtnmdpadtatyycardmifnfyfdvwgqgttvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdkth

    Sequence, based on observed residues (ATOM records): (download) 
    >5k8aH (H:)
evtlresgpalvkptqtltltctfsgfslstagmsvgwirqppgkalewladiwwddkkh
ynpslkdrltiskdtsknqvvlkvtnmdpadtatyycardmifnfyfdvwgqgttvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5k8aL (L:)
diqmtqspstlsasvgdrvtitcsassrvgymhwyqqkpgkapklliydtsklasgvpsr
fsgsgsgteftltisslqpddfatyycfqgsgypftfgggtkveikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5k8aM (M:)
diqmtqspstlsasvgdrvtitcsassrvgymhwyqqkpgkapklliydtsklasgvpsr
fsgsgsgteftltisslqpddfatyycfqgsgypftfgggtkveikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >5k8aV (V:)
evtlresgpalvkptqtltltctfsgfslstagmsvgwirqppgkalewladiwwddkkh
ynpslkdrltiskdtsknqvvlkvtnmdpadtatyycardmifnfyfdvwgqgttvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdkth

    Sequence, based on observed residues (ATOM records): (download) 
    >5k8aV (V:)
evtlresgpalvkptqtltltctfsgfslstagmsvgwirqppgkalewladiwwddkkh
ynpslkdrltiskdtsknqvvlkvtnmdpadtatyycardmifnfyfdvwgqgttvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc