PDB entry 5k82
View 5k82 on RCSB PDB site
Description: Crystal Structure of a Primate APOBEC3G N-Terminal Domain
Class: hydrolase
Keywords: APOBEC3G, Vif, HIV, APOBEC, HYDROLASE
Deposited on
2016-05-27, released
2016-08-10
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-09-13, with a file datestamp of
2017-09-08.
Experiment type: XRAY
Resolution: 2.91 Å
R-factor: N/A
AEROSPACI score: 0.14
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G
Species: Macaca mulatta [TaxId:9544]
Gene: APOBEC3G
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5k82a_ - Chain 'B':
Compound: Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G
Species: Macaca mulatta [TaxId:9544]
Gene: APOBEC3G
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5k82b_ - Chain 'C':
Compound: Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G
Species: Macaca mulatta [TaxId:9544]
Gene: APOBEC3G
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5k82c_ - Chain 'D':
Compound: Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G
Species: Macaca mulatta [TaxId:9544]
Gene: APOBEC3G
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5k82d_ - Heterogens: ZN
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5k82A (A:)
gpagsmkpqirnmvepmdprtfvsnfnnrpilsgldtvwlccevktkdpsgppldakifq
gkvypkakyhpemrflrwfhkwrqlhhdqeykvtwyvswspctrcansvatflakdpkvt
ltifvarlyyfwkpdyqqalrilaeagatmkimnynefqdcwnkfvdgrgkpfkpwnnlp
khytllqatlgellrh
Sequence, based on observed residues (ATOM records): (download)
>5k82A (A:)
qirnmvepmdprtfvsnfnnrpilsgldtvwlccevktkdpsgppldakifqgkvypkak
yhpemrflrwfhkwrqlhhdqeykvtwyvswspctrcansvatflakdpkvtltifvarl
yyfwkpdyqqalrilaeagatmkimnynefqdcwnkfvdgrgkpfkpwnnlpkhytllqa
tlgellrh
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5k82B (B:)
gpagsmkpqirnmvepmdprtfvsnfnnrpilsgldtvwlccevktkdpsgppldakifq
gkvypkakyhpemrflrwfhkwrqlhhdqeykvtwyvswspctrcansvatflakdpkvt
ltifvarlyyfwkpdyqqalrilaeagatmkimnynefqdcwnkfvdgrgkpfkpwnnlp
khytllqatlgellrh
Sequence, based on observed residues (ATOM records): (download)
>5k82B (B:)
qirnmvepmdprtfvsnfnnrpilsgldtvwlccevktkdpsgppldakifqgkvypkak
yhpemrflrwfhkwrqlhhdqeykvtwyvswspctrcansvatflakdpkvtltifvarl
yyfwkpdyqqalrilaeagatmkimnynefqdcwnkfvdgrgkpfkpwnnlpkhytllqa
tlgellrh
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5k82C (C:)
gpagsmkpqirnmvepmdprtfvsnfnnrpilsgldtvwlccevktkdpsgppldakifq
gkvypkakyhpemrflrwfhkwrqlhhdqeykvtwyvswspctrcansvatflakdpkvt
ltifvarlyyfwkpdyqqalrilaeagatmkimnynefqdcwnkfvdgrgkpfkpwnnlp
khytllqatlgellrh
Sequence, based on observed residues (ATOM records): (download)
>5k82C (C:)
qirnmvepmdprtfvsnfnnrpilsgldtvwlccevktkdpsgppldakifqgkvypkak
yhpemrflrwfhkwrqlhhdqeykvtwyvswspctrcansvatflakdpkvtltifvarl
yyfwkpdyqqalrilaeagatmkimnynefqdcwnkfvdgrgkpfkpwnnlpkhytllqa
tlgellrh
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5k82D (D:)
gpagsmkpqirnmvepmdprtfvsnfnnrpilsgldtvwlccevktkdpsgppldakifq
gkvypkakyhpemrflrwfhkwrqlhhdqeykvtwyvswspctrcansvatflakdpkvt
ltifvarlyyfwkpdyqqalrilaeagatmkimnynefqdcwnkfvdgrgkpfkpwnnlp
khytllqatlgellrh
Sequence, based on observed residues (ATOM records): (download)
>5k82D (D:)
mkpqirnmvepmdprtfvsnfnnrpilsgldtvwlccevktkdpsgppldakifqgkvyp
kakyhpemrflrwfhkwrqlhhdqeykvtwyvswspctrcansvatflakdpkvtltifv
arlyyfwkpdyqqalrilaeagatmkimnynefqdcwnkfvdgrgkpfkpwnnlpkhytl
lqatlgellrh