PDB entry 5k3j

View 5k3j on RCSB PDB site
Description: Crystals structure of Acyl-CoA oxidase-2 in Caenorhabditis elegans bound with FAD, ascaroside-CoA, and ATP
Class: oxidoreductase
Keywords: dauer pheromone; ascarosides; b-oxidation; ATP; crystal structure, OXIDOREDUCTASE
Deposited on 2016-05-19, released 2016-08-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-27, with a file datestamp of 2019-11-22.
Experiment type: XRAY
Resolution: 2.68 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acyl-coenzyme A oxidase
    Species: Caenorhabditis elegans [TaxId:6239]
    Gene: acox-2, CELE_F08A8.2, F08A8.2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O62137 (Start-660)
      • conflict (431)
      • expression tag (661-663)
    Domains in SCOPe 2.08: d5k3ja1, d5k3ja2, d5k3ja3, d5k3ja4
  • Chain 'B':
    Compound: Acyl-coenzyme A oxidase
    Species: Caenorhabditis elegans [TaxId:6239]
    Gene: acox-2, CELE_F08A8.2, F08A8.2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O62137 (Start-660)
      • conflict (431)
      • expression tag (661-664)
    Domains in SCOPe 2.08: d5k3jb1, d5k3jb2, d5k3jb3, d5k3jb4
  • Heterogens: FAD, ATP, 6QA, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5k3jA (A:)
manrsirdgdnpelleerrmatfdtdkmaaviygseefarrrreitdavskipeladikp
ypfltreekvtegtrkisiltkylnqlidrdneeeslhlhrevigyeghpfalhdalfip
tlqsqasdeqqekwlerarrreiigcyaqtelghgsnlrnlettavydiasqefvlhtpt
ttalkwwpgalgkscnyalvvaeliikrnnygphffmvqlrdekthiplkgvtvgdigpk
mnfnaadngylglnnlrvprtnllmrhckveadgtyvkpphakigysgmvkirsqmameq
glflahaltiaarysavrrqghlddkqvevkvldyqtqqhrlfpslarayafiftgfeti
hlysqllkdvdmgntsgmadlhaltsglksvvahetgegieqarmacgghgysmasyisv
vygiaiggctyagenmvmllqlarylvksvelikagkakklgpvasyladksdetdltsl
ngyvkmfenmarrqawkatekflklmesgesrevawnksaveltrasrlhtrlfiieafm
rrvsriedipvkevltdllhlhvnyelldvatyalefmsftqldyvrdqlylylekirpn
avslvdsfqisdmqlrsvlgrrdghvyenlfkwakssplnnadvlpsvekylkpmmekak
laaahhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5k3jA (A:)
nrsirdgdnpelleerrmatfdtdkmaaviygseefarrrreitdavskipeladikpyp
fltreekvtegtrkisiltkylnqlidrdneeeslhlhrevigyeghpfalhdalfiptl
qsqasdeqqekwlerarrreiigcyaqtelghgsnlrnlettavydiasqefvlhtpttt
alkwwpgalgkscnyalvvaeliikrnnygphffmvqlrdekthiplkgvtvgdigpkmn
fnaadngylglnnlrvprtnllmrhckveadgtyvkpphakigysgmvkirsqmameqgl
flahaltiaarysavrrqghlddkqvevkvldyqtqqhrlfpslarayafiftgfetihl
ysqllkdvdmgntsgmadlhaltsglksvvahetgegieqarmacgghgysmasyisvvy
giaiggctyagenmvmllqlarylvksvelikagkakklgpvasyladksdetdltslng
yvkmfenmarrqawkatekflklmesgesrevawnksaveltrasrlhtrlfiieafmrr
vsriedipvkevltdllhlhvnyelldvatyalefmsftqldyvrdqlylylekirpnav
slvdsfqisdmqlrsvlgrrdghvyenlfkwakssplnnadvlpsvekylkpmmekakla
aa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5k3jB (B:)
manrsirdgdnpelleerrmatfdtdkmaaviygseefarrrreitdavskipeladikp
ypfltreekvtegtrkisiltkylnqlidrdneeeslhlhrevigyeghpfalhdalfip
tlqsqasdeqqekwlerarrreiigcyaqtelghgsnlrnlettavydiasqefvlhtpt
ttalkwwpgalgkscnyalvvaeliikrnnygphffmvqlrdekthiplkgvtvgdigpk
mnfnaadngylglnnlrvprtnllmrhckveadgtyvkpphakigysgmvkirsqmameq
glflahaltiaarysavrrqghlddkqvevkvldyqtqqhrlfpslarayafiftgfeti
hlysqllkdvdmgntsgmadlhaltsglksvvahetgegieqarmacgghgysmasyisv
vygiaiggctyagenmvmllqlarylvksvelikagkakklgpvasyladksdetdltsl
ngyvkmfenmarrqawkatekflklmesgesrevawnksaveltrasrlhtrlfiieafm
rrvsriedipvkevltdllhlhvnyelldvatyalefmsftqldyvrdqlylylekirpn
avslvdsfqisdmqlrsvlgrrdghvyenlfkwakssplnnadvlpsvekylkpmmekak
laaahhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5k3jB (B:)
anrsirdgdnpelleerrmatfdtdkmaaviygseefarrrreitdavskipeladikpy
pfltreekvtegtrkisiltkylnqlidrdneeeslhlhrevigyeghpfalhdalfipt
lqsqasdeqqekwlerarrreiigcyaqtelghgsnlrnlettavydiasqefvlhtptt
talkwwpgalgkscnyalvvaelnygphffmvqlrdekthiplkgvtvgdigpkmnfnaa
dngylglnnlrvprtnllmrhckveadgtyvkpphakigysgmvkirsqmameqglflah
altiaarysavrrqghlddkqvevkvldyqtqqhrlfpslarayafiftgfetihlysql
lkdvdmgntsgmadlhaltsglksvvahetgegieqarmacgghgysmasyisvvygiai
ggctyagenmvmllqlarylvksvelikagkakklgpvasyladksdetdltslngyvkm
fenmarrqawkatekflklmesgesrevawnksaveltrasrlhtrlfiieafmrrvsri
edipvkevltdllhlhvnyelldvatyalefmsftqldyvrdqlylylekirpnavslvd
sfqisdmqlrsvlgrrdghvyenlfkwakssplnnadvlpsvekylkpmmekaklaaah