PDB entry 5k0u
View 5k0u on RCSB PDB site
Description: CryoEM structure of the full virion of a human rhinovirus C
Class: virus
Keywords: virus, jelly roll
Deposited on
2016-05-17, released
2016-07-13
The last revision prior to the SCOPe 2.06 freeze date was dated
2016-07-13, with a file datestamp of
2016-07-08.
Experiment type: EM
Resolution: 2.79 Å
R-factor: N/A
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Capsid protein VP1
Species: Rhinovirus C [TaxId:463676]
Database cross-references and differences (RAF-indexed):
- Uniprot E5D8F2 (Start-278)
- engineered mutation (124)
Domains in SCOPe 2.06: d5k0ua_ - Chain 'B':
Compound: capsid protein vp3
Species: Rhinovirus C [TaxId:463676]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5k0ub_ - Chain 'C':
Compound: capsid protein VP2
Species: Rhinovirus C [TaxId:463676]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: capsid protein VP4
Species: Rhinovirus C [TaxId:463676]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5k0uA (A:)
nnddpvenfvestlkevlvvpdtkpsgpqhttkpsilgameigassnatpestietryvy
ntntnaeadvemflgrsalwgkvtltrqyakweinfqeqahirkkfefftylrfdmevti
vtnnkglmqimfvppgidhpethddrkwdsasnpsvffqpksgfprftipftglasayym
fydgydkpkgsdnneygiaptndmgllcfrtldnsggndvkiyvkpkhitawvprpprat
qythkystnyhykpnssgpdehvlkdrhfiktrplissa
Sequence, based on observed residues (ATOM records): (download)
>5k0uA (A:)
vlvvpdtkpsgpqhttkpsilgameigassnatpestietryvyntntnaeadvemflgr
salwgkvtltrqyakweinfqeqahirkkfefftylrfdmevtivtnnkglmqimfvppg
idhpethddrkwdsasnpsvffqpksgfprftipftglasayymfydgydkpkgsdnney
giaptndmgllcfrtldnsggndvkiyvkpkhitawvprppratqythkystnyhykpns
sgpdehvlkdrhfiktrplissa
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>5k0uB (B:)
glptrlpsgsqqfmttedeqspnilpgfhpskkihipgmitnvmhmarvdsfipinniqg
evgkvsmyyitvtkktvterilvlplemsntlfattllgevlnyyanwsgsititfmcvc
dafstgkflvaytppggklpedrkqamlgvhiiwdlglqssctivvpwissgfyrrtkad
sfthggyvslwyqtafvppvsggtgsilatcsacpdmsvrmlrdspmmeqknelq
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.