PDB entry 5jzg
View 5jzg on RCSB PDB site
Description: CryoEM structure of the native empty particle of a human rhinovirus C
Class: virus
Keywords: virus, jelly roll
Deposited on
2016-05-16, released
2016-07-13
The last revision prior to the SCOPe 2.06 freeze date was dated
2016-07-13, with a file datestamp of
2016-07-08.
Experiment type: EM
Resolution: 3.16 Å
R-factor: N/A
AEROSPACI score: 0.13
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Capsid protein VP1
Species: Rhinovirus C [TaxId:463676]
Database cross-references and differences (RAF-indexed):
- Uniprot E5D8F2 (Start-278)
- engineered mutation (124)
- Chain 'B':
Compound: capsid protein vp3
Species: Rhinovirus C [TaxId:463676]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5jzgb_ - Chain 'C':
Compound: capsid protein VP0
Species: Rhinovirus C [TaxId:463676]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5jzgc_
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>5jzgB (B:)
glptrlpsgsqqfmttedeqspnilpgfhpskkihipgmitnvmhmarvdsfipinniqg
evgkvsmyyitvtkktvterilvlplemsntlfattllgevlnyyanwsgsititfmcvc
dafstgkflvaytppggklpedrkqamlgvhiiwdlglqssctivvpwissgfyrrtkad
sfthggyvslwyqtafvppvsggtgsilatcsacpdmsvrmlrdspmmeqknelq
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5jzgC (C:)
gaqvsrqnngthengvtasngsvikyfninyykdsassglsrqdfsqdpskftqplvdtl
tnpalmspsveacgysdrlkqitignstittqdslhtvlaygewptylsdidatsvdkpt
hpetsadrfytldsvewqvgshgwwwklpdalkdmgvfgqnmyyhsmgrsgfiihtqcna
tkfhsgalivavipehqlayvggvkvnvgydhthpgqsghqirgpsqsndrsggkpdedp
lfncngtllgnitifphqiinlrtnnsstivvpyincvpmdnmlkhnnlslviiplvplr
pgssginsvpitvtiapyksefsgameaqrq
Sequence, based on observed residues (ATOM records): (download)
>5jzgC (C:)
gaqvssvikyfninyykdsassglsrqdfsqdpstltnpalmspsveacgysdrqitign
stittslhtvlaygewptylsdidatsvdkpthpetsadrfytldsvewqvgshgwwwkl
pdalkdmgvfgqnmyyhsmgrsgfiihtqcnatkfhsgalivavipehqlayvggvkvnv
gydhthpgqsghqirgpsqsndrsggkpdedplfncngtllgnitifphqiinlrtnnss
tivvpyincvpmdnmlkhnnlslviiplvplrpgssginsvpitvtiapyksefsgamea
qrq