PDB entry 5jyl
View 5jyl on RCSB PDB site
Description: Human P-cadherin MEC1 with scFv TSP7 bound
Class: cell adhesion/immune system
Keywords: Cadherin Cell adhesion Antibody Protein-protein interaction, OXIDOREDUCTASE, CELL ADHESION-IMMUNE SYSTEM complex
Deposited on
2016-05-14, released
2016-12-28
The last revision prior to the SCOPe 2.06 freeze date was dated
2016-12-28, with a file datestamp of
2016-12-22.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Cadherin-3
Species: Homo sapiens [TaxId:9606]
Gene: CDH3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5jyla_ - Chain 'B':
Compound: scFv TSP7
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5jylb1, d5jylb2 - Chain 'C':
Compound: Cadherin-3
Species: Homo sapiens [TaxId:9606]
Gene: CDH3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5jylc_ - Chain 'D':
Compound: scFv TSP7
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5jyld1, d5jyld2 - Heterogens: GOL, PO4, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5jylA (A:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtd
Sequence, based on observed residues (ATOM records): (download)
>5jylA (A:)
vapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgwllln
kpldreeiakyelfghavsengasvedpmnisiivtd
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5jylB (B:)
qvqlqesgpelvkpgasvkmsckasgysftaynmhwvkqshgkslewigfidpysgiity
nqtfkgkatltvdkssstaymqlnsltsedsavyycarrgyydggfdywgqgttltvsss
aggggsggggsggggsdidiqmtqttsslsaslgdrvtiscrasqditnylnwyqqkpdg
tvklliyytsrlhsgvpsrfsgsgsgtdysltisnleqediatyfcqqdskhprtfgggt
kleiksahhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5jylB (B:)
qvqlqesgpelvkpgasvkmsckasgysftaynmhwvkqshgkslewigfidpysgiity
nqtfkgkatltvdkssstaymqlnsltsedsavyycarrgyydggfdywgqgttltvsgg
gsdidiqmtqttsslsaslgdrvtiscrasqditnylnwyqqkpdgtvklliyytsrlhs
gvpsrfsgsgsgtdysltisnleqediatyfcqqdskhprtfgggtklei
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5jylC (C:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtd
Sequence, based on observed residues (ATOM records): (download)
>5jylC (C:)
apisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgwlllnk
pldreeiakyelfghavsengasvedpmnisiivtd
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5jylD (D:)
qvqlqesgpelvkpgasvkmsckasgysftaynmhwvkqshgkslewigfidpysgiity
nqtfkgkatltvdkssstaymqlnsltsedsavyycarrgyydggfdywgqgttltvsss
aggggsggggsggggsdidiqmtqttsslsaslgdrvtiscrasqditnylnwyqqkpdg
tvklliyytsrlhsgvpsrfsgsgsgtdysltisnleqediatyfcqqdskhprtfgggt
kleiksahhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5jylD (D:)
qvqlqesgpelvkpgasvkmsckasgysftaynmhwvkqshkslewigfidpysgiityn
qtfkgkatltvdkssstaymqlnsltsedsavyycarrgyydggfdywgqgttltvsidi
qmtqttsslsaslgdrvtiscrasqditnylnwyqqkpdgtvklliyytsrlhsgvpsrf
sgsgsgtdysltisnleqediatyfcqqdskhprtfgggtkl