PDB entry 5jvj

View 5jvj on RCSB PDB site
Description: C4-type pyruvate phosphate dikinase: different conformational states of the nucleotide binding domain in the dimer
Class: transferase
Keywords: phosphotransferase, nucleotide binding, conformational transition, swiveling mechanism, transferase
Deposited on 2016-05-11, released 2017-04-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-04-12, with a file datestamp of 2017-04-07.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyruvate, phosphate dikinase, chloroplastic
    Species: Flaveria trinervia [TaxId:4227]
    Gene: PPDK, PDK
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5jvja1, d5jvja2, d5jvja3
  • Chain 'B':
    Compound: Pyruvate, phosphate dikinase, chloroplastic
    Species: Flaveria trinervia [TaxId:4227]
    Gene: PPDK, PDK
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5jvjb1, d5jvjb2, d5jvjb3
  • Heterogens: PEP, MG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5jvjA (A:)
kkrvftfgkgrsegnrdmksllggkganlaemssiglsvppgltisteaceeyqqngksl
ppglwdeisegldyvqkemsaslgdpskplllsvrsgaaismpgmmdtvlnlglndevva
glagksgarfaydsyrrfldmfgnvvmgiphslfdekleqmkaekgihldtdltaadlkd
lvekyknvyveakgekfptdpkkqlelavnavfdswdsprankyrsinqitglkgtavni
qsmvfgnmgntsgtgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmp
eaykelvenceilerhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvnegli
dtrtaikrvetqhldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwha
qgksailvrtetspedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvndd
mkiftigdrvikegdwlslngttgevilgkqllappamsndleifmswadqarrlkvman
adtpndaltarnngaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyq
rsdfegiframdglpvtirlldpplheflpegdlehivnelavdtgmsadeiyskienls
evnpmlgfrgcrlgisypeltemqvraifqaavsmtnqgvtvipeimvplvgtpqelrhq
isvirgvaanvfaemgvtleykvgtmieipraaliaeeigkeadffsfgtndltqmtfgy
srddvgkflqiylaqgilqhdpfevidqkgvgqlikmatekgraanpslkvgicgehgge
pssvaffdgvgldyvscspfrvpiarlaaaqviv

    Sequence, based on observed residues (ATOM records): (download) 
    >5jvjA (A:)
kkrvftfgkgrsegnrdmksllggkganlaemssiglsvppgltisteaceeyqqngksl
ppglwdeisegldyvqkemsaslgdpskplllsvrsgaaismdtvlnlglndevvaglag
ksgarfaydsyrrfldmfgnvvmgiphslfdekleqmkaedtdltaadlkdlvekyknvy
veakgekfptdpkkqlelavnavfdswdsprankyrsinqitglkgtavniqsmvfgnmg
ntsgtgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmpeaykelven
ceilerhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvneglidtrtaikrv
etqhldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwhaqgksailvr
tetspedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvnddmkiftigdr
vikegdwlslngttgevilgkqllappamsndleifmswadqarrlkvmanadtpndalt
arnngaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyqrsdfegifr
amdglpvtirlldpplheflpegdlehivnelavdtgmsadeiyskienlsevnpmlgfr
gcrlgisypeltemqvraifqaavsmtnqgvtvipeimvplvgtpqelrhqisvirgvaa
nvfaemgvtleykvgtmieipraaliaeeigkeadffsfgtndltqmtfgysrddvgkfl
qiylaqgilqhdpfevidqkgvgqlikmatekgraanpslkvgicgehggepssvaffdg
vgldyvscspfrvpiarlaaaqviv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5jvjB (B:)
kkrvftfgkgrsegnrdmksllggkganlaemssiglsvppgltisteaceeyqqngksl
ppglwdeisegldyvqkemsaslgdpskplllsvrsgaaismpgmmdtvlnlglndevva
glagksgarfaydsyrrfldmfgnvvmgiphslfdekleqmkaekgihldtdltaadlkd
lvekyknvyveakgekfptdpkkqlelavnavfdswdsprankyrsinqitglkgtavni
qsmvfgnmgntsgtgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmp
eaykelvenceilerhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvnegli
dtrtaikrvetqhldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwha
qgksailvrtetspedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvndd
mkiftigdrvikegdwlslngttgevilgkqllappamsndleifmswadqarrlkvman
adtpndaltarnngaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyq
rsdfegiframdglpvtirlldpplheflpegdlehivnelavdtgmsadeiyskienls
evnpmlgfrgcrlgisypeltemqvraifqaavsmtnqgvtvipeimvplvgtpqelrhq
isvirgvaanvfaemgvtleykvgtmieipraaliaeeigkeadffsfgtndltqmtfgy
srddvgkflqiylaqgilqhdpfevidqkgvgqlikmatekgraanpslkvgicgehgge
pssvaffdgvgldyvscspfrvpiarlaaaqviv

    Sequence, based on observed residues (ATOM records): (download) 
    >5jvjB (B:)
krvftfgkgrsegnrdggkganlaemssiglsvppgltisdeisegldyvqkemsaskpl
llsvrsgaaidtvlnlglndevvksgarfaydsyrrfldmfgnvvmgiphslfdekleqm
kihldtdltaadlkdlvekyknvyvetdpkkqlelavnavfdsavniqsmvfgnmgntsg
tgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmpeaykelvenceil
erhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvneglidtrtaikrvetqh
ldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwhaqgksailvrtets
pedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvnddmkiftigdrvike
gdwlslngttgevilgkqllappamsndleifmswadqarrlkvmanadtpndaltarnn
gaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyqrsdfegiframdg
lpvtirlldpplheflpdlehivnelavdmsadeiyskienlsevnpmlgfrgcrlgisy
peltemqvraifqaavsmtnqgvtvipeimvplvgtpqelrhqisvirgvaanvfaemgv
tleykvgtmieipraaliaeeigkeadffsfgtndltqmtfgysrddvgkflqiylaqgi
lqhdpfevidqkgvgqlikmatekgraanpslkvgicgehggepssvaffdgvgldyvsc
spfrvpiarlaaaqviv